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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2010 3
2011 3
2012 2
2013 3
2014 1
2015 2
2016 5
2017 2
2018 3
2019 6
2020 7
2021 7
2022 5
2023 6

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48 results

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Page 1
Building pangenome graphs.
Garrison E, Guarracino A, Heumos S, Villani F, Bao Z, Tattini L, Hagmann J, Vorbrugg S, Marco-Sola S, Kubica C, Ashbrook DG, Thorell K, Rusholme-Pilcher RL, Liti G, Rudbeck E, Nahnsen S, Yang Z, Moses MN, Nobrega FL, Wu Y, Chen H, de Ligt J, Sudmant PH, Soranzo N, Colonna V, Williams RW, Prins P. Garrison E, et al. Among authors: nahnsen s. bioRxiv. 2023 Apr 6:2023.04.05.535718. doi: 10.1101/2023.04.05.535718. Preprint. bioRxiv. 2023. PMID: 37066137 Free PMC article.
Downregulation of TGR5 (GPBAR1) in biliary epithelial cells contributes to the pathogenesis of sclerosing cholangitis.
Reich M, Spomer L, Klindt C, Fuchs K, Stindt J, Deutschmann K, Höhne J, Liaskou E, Hov JR, Karlsen TH, Beuers U, Verheij J, Ferreira-Gonzalez S, Hirschfield G, Forbes SJ, Schramm C, Esposito I, Nierhoff D, Fickert P, Fuchs CD, Trauner M, García-Beccaria M, Gabernet G, Nahnsen S, Mallm JP, Vogel M, Schoonjans K, Lautwein T, Köhrer K, Häussinger D, Luedde T, Heikenwalder M, Keitel V. Reich M, et al. Among authors: nahnsen s. J Hepatol. 2021 Sep;75(3):634-646. doi: 10.1016/j.jhep.2021.03.029. Epub 2021 Apr 17. J Hepatol. 2021. PMID: 33872692 Free article.
ODGI: understanding pangenome graphs.
Guarracino A, Heumos S, Nahnsen S, Prins P, Garrison E. Guarracino A, et al. Among authors: nahnsen s. Bioinformatics. 2022 Jun 27;38(13):3319-3326. doi: 10.1093/bioinformatics/btac308. Bioinformatics. 2022. PMID: 35552372 Free PMC article.
Ten simple rules for providing effective bioinformatics research support.
Kumuthini J, Chimenti M, Nahnsen S, Peltzer A, Meraba R, McFadyen R, Wells G, Taylor D, Maienschein-Cline M, Li JL, Thimmapuram J, Murthy-Karuturi R, Zass L. Kumuthini J, et al. Among authors: nahnsen s. PLoS Comput Biol. 2020 Mar 26;16(3):e1007531. doi: 10.1371/journal.pcbi.1007531. eCollection 2020 Mar. PLoS Comput Biol. 2020. PMID: 32214318 Free PMC article.
Tools for label-free peptide quantification.
Nahnsen S, Bielow C, Reinert K, Kohlbacher O. Nahnsen S, et al. Mol Cell Proteomics. 2013 Mar;12(3):549-56. doi: 10.1074/mcp.R112.025163. Epub 2012 Dec 17. Mol Cell Proteomics. 2013. PMID: 23250051 Free PMC article. Review.
Sustainable data analysis with Snakemake.
Mölder F, Jablonski KP, Letcher B, Hall MB, Tomkins-Tinch CH, Sochat V, Forster J, Lee S, Twardziok SO, Kanitz A, Wilm A, Holtgrewe M, Rahmann S, Nahnsen S, Köster J. Mölder F, et al. Among authors: nahnsen s. F1000Res. 2021 Jan 18;10:33. doi: 10.12688/f1000research.29032.2. eCollection 2021. F1000Res. 2021. PMID: 34035898 Free PMC article.
Challenges of big data integration in the life sciences.
Fillinger S, de la Garza L, Peltzer A, Kohlbacher O, Nahnsen S. Fillinger S, et al. Among authors: nahnsen s. Anal Bioanal Chem. 2019 Oct;411(26):6791-6800. doi: 10.1007/s00216-019-02074-9. Epub 2019 Aug 28. Anal Bioanal Chem. 2019. PMID: 31463515 Review.
mlf-core: a framework for deterministic machine learning.
Heumos L, Ehmele P, Kuhn Cuellar L, Menden K, Miller E, Lemke S, Gabernet G, Nahnsen S. Heumos L, et al. Among authors: nahnsen s. Bioinformatics. 2023 Apr 3;39(4):btad164. doi: 10.1093/bioinformatics/btad164. Bioinformatics. 2023. PMID: 37004171 Free PMC article.
48 results