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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2004 2
2005 1
2006 2
2007 2
2009 3
2010 2
2011 3
2012 5
2013 6
2014 3
2015 3
2016 5
2017 5
2018 9
2019 5
2020 12
2021 10
2022 9
2023 12

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94 results

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Page 1
Investigate the origins of COVID-19.
Bloom JD, Chan YA, Baric RS, Bjorkman PJ, Cobey S, Deverman BE, Fisman DN, Gupta R, Iwasaki A, Lipsitch M, Medzhitov R, Neher RA, Nielsen R, Patterson N, Stearns T, van Nimwegen E, Worobey M, Relman DA. Bloom JD, et al. Among authors: neher ra. Science. 2021 May 14;372(6543):694. doi: 10.1126/science.abj0016. Science. 2021. PMID: 33986172 Free PMC article. No abstract available.
A pseudovirus system enables deep mutational scanning of the full SARS-CoV-2 spike.
Dadonaite B, Crawford KHD, Radford CE, Farrell AG, Yu TC, Hannon WW, Zhou P, Andrabi R, Burton DR, Liu L, Ho DD, Chu HY, Neher RA, Bloom JD. Dadonaite B, et al. Among authors: neher ra. Cell. 2023 Mar 16;186(6):1263-1278.e20. doi: 10.1016/j.cell.2023.02.001. Epub 2023 Feb 13. Cell. 2023. PMID: 36868218 Free PMC article.
TreeTime: Maximum-likelihood phylodynamic analysis.
Sagulenko P, Puller V, Neher RA. Sagulenko P, et al. Among authors: neher ra. Virus Evol. 2018 Jan 8;4(1):vex042. doi: 10.1093/ve/vex042. eCollection 2018 Jan. Virus Evol. 2018. PMID: 29340210 Free PMC article.
Evolution of the SARS-CoV-2 Mutational Spectrum.
Bloom JD, Beichman AC, Neher RA, Harris K. Bloom JD, et al. Among authors: neher ra. Mol Biol Evol. 2023 Apr 4;40(4):msad085. doi: 10.1093/molbev/msad085. Mol Biol Evol. 2023. PMID: 37039557 Free PMC article.
Evolution of the SARS-CoV-2 mutational spectrum.
Bloom JD, Beichman AC, Neher RA, Harris K. Bloom JD, et al. Among authors: neher ra. bioRxiv. 2022 Nov 21:2022.11.19.517207. doi: 10.1101/2022.11.19.517207. Preprint. bioRxiv. 2022. PMID: 36451887 Free PMC article. Updated.
panX: pan-genome analysis and exploration.
Ding W, Baumdicker F, Neher RA. Ding W, et al. Among authors: neher ra. Nucleic Acids Res. 2018 Jan 9;46(1):e5. doi: 10.1093/nar/gkx977. Nucleic Acids Res. 2018. PMID: 29077859 Free PMC article.
Nextstrain: real-time tracking of pathogen evolution.
Hadfield J, Megill C, Bell SM, Huddleston J, Potter B, Callender C, Sagulenko P, Bedford T, Neher RA. Hadfield J, et al. Among authors: neher ra. Bioinformatics. 2018 Dec 1;34(23):4121-4123. doi: 10.1093/bioinformatics/bty407. Bioinformatics. 2018. PMID: 29790939 Free PMC article.
Novel SARS-CoV-2 variants: the pandemics within the pandemic.
Boehm E, Kronig I, Neher RA, Eckerle I, Vetter P, Kaiser L; Geneva Centre for Emerging Viral Diseases. Boehm E, et al. Among authors: neher ra. Clin Microbiol Infect. 2021 Aug;27(8):1109-1117. doi: 10.1016/j.cmi.2021.05.022. Epub 2021 May 17. Clin Microbiol Infect. 2021. PMID: 34015535 Free PMC article. Review.
94 results