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XYZeq: Spatially resolved single-cell RNA sequencing reveals expression heterogeneity in the tumor microenvironment.
Lee Y, Bogdanoff D, Wang Y, Hartoularos GC, Woo JM, Mowery CT, Nisonoff HM, Lee DS, Sun Y, Lee J, Mehdizadeh S, Cantlon J, Shifrut E, Ngyuen DN, Roth TL, Song YS, Marson A, Chow ED, Ye CJ. Lee Y, et al. Among authors: nisonoff hm. Sci Adv. 2021 Apr 21;7(17):eabg4755. doi: 10.1126/sciadv.abg4755. Print 2021 Apr. Sci Adv. 2021. PMID: 33883145 Free PMC article.
Algorithms for protein design.
Gainza P, Nisonoff HM, Donald BR. Gainza P, et al. Among authors: nisonoff hm. Curr Opin Struct Biol. 2016 Aug;39:16-26. doi: 10.1016/ Epub 2016 Apr 14. Curr Opin Struct Biol. 2016. PMID: 27086078 Free PMC article. Review.
OSPREY 3.0: Open-source protein redesign for you, with powerful new features.
Hallen MA, Martin JW, Ojewole A, Jou JD, Lowegard AU, Frenkel MS, Gainza P, Nisonoff HM, Mukund A, Wang S, Holt GT, Zhou D, Dowd E, Donald BR. Hallen MA, et al. Among authors: nisonoff hm. J Comput Chem. 2018 Nov 15;39(30):2494-2507. doi: 10.1002/jcc.25522. Epub 2018 Oct 14. J Comput Chem. 2018. PMID: 30368845 Free PMC article.
Discovery and Validation of the Binding Poses of Allosteric Fragment Hits to Protein Tyrosine Phosphatase 1b: From Molecular Dynamics Simulations to X-ray Crystallography.
Greisman JB, Willmore L, Yeh CY, Giordanetto F, Shahamadtar S, Nisonoff H, Maragakis P, Shaw DE. Greisman JB, et al. Among authors: nisonoff h. J Chem Inf Model. 2023 May 8;63(9):2644-2650. doi: 10.1021/acs.jcim.3c00236. Epub 2023 Apr 22. J Chem Inf Model. 2023. PMID: 37086179 Free PMC article.