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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2002 3
2003 5
2004 4
2005 1
2006 3
2007 2
2008 7
2009 10
2010 7
2011 7
2012 6
2013 9
2014 4
2015 9
2016 5
2017 13
2018 6
2019 9
2020 12
2021 10
2022 11
2023 12
2024 0

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142 results

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Page 1
Enterococci enhance Clostridioides difficile pathogenesis.
Smith AB, Jenior ML, Keenan O, Hart JL, Specker J, Abbas A, Rangel PC, Di C, Green J, Bustin KA, Gaddy JA, Nicholson MR, Laut C, Kelly BJ, Matthews ML, Evans DR, Van Tyne D, Furth EE, Papin JA, Bushman FD, Erlichman J, Baldassano RN, Silverman MA, Dunny GM, Prentice BM, Skaar EP, Zackular JP. Smith AB, et al. Among authors: papin ja. Nature. 2022 Nov;611(7937):780-786. doi: 10.1038/s41586-022-05438-x. Epub 2022 Nov 16. Nature. 2022. PMID: 36385534 Free PMC article.
Histone Deacetylase Inhibition by Gut Microbe-Generated Short-Chain Fatty Acids Entrains Intestinal Epithelial Circadian Rhythms.
Fawad JA, Luzader DH, Hanson GF, Moutinho TJ Jr, McKinney CA, Mitchell PG, Brown-Steinke K, Kumar A, Park M, Lee S, Bolick DT, Medlock GL, Zhao JY, Rosselot AE, Chou CJ, Eshleman EM, Alenghat T, Hong CI, Papin JA, Moore SR. Fawad JA, et al. Among authors: papin ja. Gastroenterology. 2022 Nov;163(5):1377-1390.e11. doi: 10.1053/j.gastro.2022.07.051. Epub 2022 Aug 4. Gastroenterology. 2022. PMID: 35934064
Computing Biology.
Nussinov R, Papin JA. Nussinov R, et al. Among authors: papin ja. PLoS Comput Biol. 2016 Jul 12;12(7):e1005050. doi: 10.1371/journal.pcbi.1005050. eCollection 2016 Jul. PLoS Comput Biol. 2016. PMID: 27403659 Free PMC article. No abstract available.
One thousand simple rules.
Bourne PE, Lewitter F, Markel S, Papin JA. Bourne PE, et al. Among authors: papin ja. PLoS Comput Biol. 2018 Dec 20;14(12):e1006670. doi: 10.1371/journal.pcbi.1006670. eCollection 2018 Dec. PLoS Comput Biol. 2018. PMID: 30571692 Free PMC article. No abstract available.
Mechanistic models of microbial community metabolism.
Dillard LR, Payne DD, Papin JA. Dillard LR, et al. Among authors: papin ja. Mol Omics. 2021 Jun 14;17(3):365-375. doi: 10.1039/d0mo00154f. Mol Omics. 2021. PMID: 34125127 Free PMC article. Review.
Improving reproducibility in computational biology research.
Papin JA, Mac Gabhann F, Sauro HM, Nickerson D, Rampadarath A. Papin JA, et al. PLoS Comput Biol. 2020 May 19;16(5):e1007881. doi: 10.1371/journal.pcbi.1007881. eCollection 2020 May. PLoS Comput Biol. 2020. PMID: 32427998 Free PMC article. No abstract available.
Wisdom of crowds in computational biology.
Papin JA, Mac Gabhann F. Papin JA, et al. PLoS Comput Biol. 2019 May 23;15(5):e1007032. doi: 10.1371/journal.pcbi.1007032. eCollection 2019 May. PLoS Comput Biol. 2019. PMID: 31120879 Free PMC article. No abstract available.
Ten simple rules for launching an academic research career.
Papin JA, Keim-Malpass J, Syed S. Papin JA, et al. PLoS Comput Biol. 2022 Dec 15;18(12):e1010689. doi: 10.1371/journal.pcbi.1010689. eCollection 2022 Dec. PLoS Comput Biol. 2022. PMID: 36520710 Free PMC article. No abstract available.
Collaborating with our community to increase code sharing.
Cadwallader L, Papin JA, Mac Gabhann F, Kirk R. Cadwallader L, et al. Among authors: papin ja. PLoS Comput Biol. 2021 Mar 30;17(3):e1008867. doi: 10.1371/journal.pcbi.1008867. eCollection 2021 Mar. PLoS Comput Biol. 2021. PMID: 33784294 Free PMC article. No abstract available.
An engineering design approach to systems biology.
Janes KA, Chandran PL, Ford RM, Lazzara MJ, Papin JA, Peirce SM, Saucerman JJ, Lauffenburger DA. Janes KA, et al. Among authors: papin ja. Integr Biol (Camb). 2017 Jul 17;9(7):574-583. doi: 10.1039/c7ib00014f. Integr Biol (Camb). 2017. PMID: 28590470 Free PMC article. Review.
142 results