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Machine learning to attribute the source of Campylobacter infections in the United States: A retrospective analysis of national surveillance data.
Pascoe B, Futcher G, Pensar J, Bayliss SC, Mourkas E, Calland JK, Hitchings MD, Joseph LA, Lane CG, Greenlee T, Arning N, Wilson DJ, Jolley KA, Corander J, Maiden MCJ, Parker CT, Cooper KK, Rose EB, Hiett K, Bruce BB, Sheppard SK. Pascoe B, et al. J Infect. 2024 Nov;89(5):106265. doi: 10.1016/j.jinf.2024.106265. Epub 2024 Sep 7. J Infect. 2024. PMID: 39245152 Free article.
High-resolution sweep metagenomics using fast probabilistic inference.
Mäklin T, Kallonen T, David S, Boinett CJ, Pascoe B, Méric G, Aanensen DM, Feil EJ, Baker S, Parkhill J, Sheppard SK, Corander J, Honkela A. Mäklin T, et al. Among authors: pascoe b. Wellcome Open Res. 2021 Oct 8;5:14. doi: 10.12688/wellcomeopenres.15639.2. eCollection 2020. Wellcome Open Res. 2021. PMID: 34746439 Free PMC article.
Domestication of Campylobacter jejuni NCTC 11168.
Pascoe B, Williams LK, Calland JK, Meric G, Hitchings MD, Dyer M, Ryder J, Shaw S, Lopes BS, Chintoan-Uta C, Allan E, Vidal A, Fearnley C, Everest P, Pachebat JA, Cogan TA, Stevens MP, Humphrey TJ, Wilkinson TS, Cody AJ, Colles FM, Jolley KA, Maiden MCJ, Strachan N, Pearson BM, Linton D, Wren BW, Parkhill J, Kelly DJ, van Vliet AHM, Forbes KJ, Sheppard SK. Pascoe B, et al. Microb Genom. 2019 Jul;5(7):e000279. doi: 10.1099/mgen.0.000279. Epub 2019 Jul 16. Microb Genom. 2019. PMID: 31310201 Free PMC article.
Epistasis, core-genome disharmony, and adaptation in recombining bacteria.
Taylor AJ, Yahara K, Pascoe B, Ko S, Mageiros L, Mourkas E, Calland JK, Puranen S, Hitchings MD, Jolley KA, Kobras CM, Bayliss S, Williams NJ, van Vliet AHM, Parkhill J, Maiden MCJ, Corander J, Hurst LD, Falush D, Keim P, Didelot X, Kelly DJ, Sheppard SK. Taylor AJ, et al. Among authors: pascoe b. mBio. 2024 Jun 12;15(6):e0058124. doi: 10.1128/mbio.00581-24. Epub 2024 Apr 29. mBio. 2024. PMID: 38683013 Free PMC article.
Genomic resistant determinants of multidrug-resistant Campylobacter spp. isolates in Peru.
Schiaffino F, Parker CT, Paredes Olortegui M, Pascoe B, Manzanares Villanueva K, Garcia Bardales PF, Mourkas E, Huynh S, Peñataro Yori P, Romaina Cachique L, Gray HK, Salvatierra G, Silva Delgado H, Sheppard SK, Cooper KK, Kosek MN. Schiaffino F, et al. Among authors: pascoe b. J Glob Antimicrob Resist. 2024 Mar;36:309-318. doi: 10.1016/j.jgar.2024.01.009. Epub 2024 Jan 24. J Glob Antimicrob Resist. 2024. PMID: 38272215 Free PMC article.
From Escherich to the Escherichia coli genome.
Méric G, Hitchings MD, Pascoe B, Sheppard SK. Méric G, et al. Among authors: pascoe b. Lancet Infect Dis. 2016 Jun;16(6):634-636. doi: 10.1016/S1473-3099(16)30066-4. Lancet Infect Dis. 2016. PMID: 27301915 No abstract available.
Repeated out-of-Africa expansions of Helicobacter pylori driven by replacement of deleterious mutations.
Thorpe HA, Tourrette E, Yahara K, Vale FF, Liu S, Oleastro M, Alarcon T, Perets TT, Latifi-Navid S, Yamaoka Y, Martinez-Gonzalez B, Karayiannis I, Karamitros T, Sgouras DN, Elamin W, Pascoe B, Sheppard SK, Ronkainen J, Aro P, Engstrand L, Agreus L, Suerbaum S, Thorell K, Falush D. Thorpe HA, et al. Among authors: pascoe b. Nat Commun. 2022 Nov 11;13(1):6842. doi: 10.1038/s41467-022-34475-3. Nat Commun. 2022. PMID: 36369175 Free PMC article.
Recombination-Mediated Host Adaptation by Avian Staphylococcus aureus.
Murray S, Pascoe B, Méric G, Mageiros L, Yahara K, Hitchings MD, Friedmann Y, Wilkinson TS, Gormley FJ, Mack D, Bray JE, Lamble S, Bowden R, Jolley KA, Maiden MCJ, Wendlandt S, Schwarz S, Corander J, Fitzgerald JR, Sheppard SK. Murray S, et al. Among authors: pascoe b. Genome Biol Evol. 2017 Apr 1;9(4):830-842. doi: 10.1093/gbe/evx037. Genome Biol Evol. 2017. PMID: 28338786 Free PMC article.
88 results