Patro R[au] - Search Results

Year	Number of Results
2008	2
2009	1
2011	2
2012	2
2013	3
2014	2
2015	4
2016	3
2017	4
2018	8
2019	5
2020	6
2021	6
2022	6

1

Salmon provides fast and bias-aware quantification of transcript expression.

Patro R, Duggal G, Love MI, Irizarry RA, Kingsford C. Patro R, et al. Nat Methods. 2017 Apr;14(4):417-419. doi: 10.1038/nmeth.4197. Epub 2017 Mar 6. Nat Methods. 2017. PMID: 28263959 Free PMC article.

2

Compression of quantification uncertainty for scRNA-seq counts.

Van Buren S, Sarkar H, Srivastava A, Rashid NU, Patro R, Love MI. Van Buren S, et al. Among authors: patro r. Bioinformatics. 2021 Jan 20;37(12):1699-707. doi: 10.1093/bioinformatics/btab001. Online ahead of print. Bioinformatics. 2021. PMID: 33471073 Free PMC article.

3

Algorithms meet sequencing technologies - 10th edition of the RECOMB-Seq workshop.

Patro R, Salmela L. Patro R, et al. iScience. 2020 Dec 17;24(1):101956. doi: 10.1016/j.isci.2020.101956. eCollection 2021 Jan 22. iScience. 2020. PMID: 33437938 Free PMC article. Review.

4

Preprocessing choices affect RNA velocity results for droplet scRNA-seq data.

Soneson C, Srivastava A, Patro R, Stadler MB. Soneson C, et al. Among authors: patro r. PLoS Comput Biol. 2021 Jan 11;17(1):e1008585. doi: 10.1371/journal.pcbi.1008585. eCollection 2021 Jan. PLoS Comput Biol. 2021. PMID: 33428615 Free PMC article.

5

Quark enables semi-reference-based compression of RNA-seq data.

Sarkar H, Patro R. Sarkar H, et al. Among authors: patro r. Bioinformatics. 2017 Nov 1;33(21):3380-3386. doi: 10.1093/bioinformatics/btx428. Bioinformatics. 2017. PMID: 29077806

6

Alignment and mapping methodology influence transcript abundance estimation.

Srivastava A, Malik L, Sarkar H, Zakeri M, Almodaresi F, Soneson C, Love MI, Kingsford C, Patro R. Srivastava A, et al. Among authors: patro r. Genome Biol. 2020 Sep 7;21(1):239. doi: 10.1186/s13059-020-02151-8. Genome Biol. 2020. PMID: 32894187 Free PMC article.

7

Tximeta: Reference sequence checksums for provenance identification in RNA-seq.

Love MI, Soneson C, Hickey PF, Johnson LK, Pierce NT, Shepherd L, Morgan M, Patro R. Love MI, et al. Among authors: patro r. PLoS Comput Biol. 2020 Feb 25;16(2):e1007664. doi: 10.1371/journal.pcbi.1007664. eCollection 2020 Feb. PLoS Comput Biol. 2020. PMID: 32097405 Free PMC article.

8

Rich Chromatin Structure Prediction from Hi-C Data.

Malik L, Patro R. Malik L, et al. Among authors: patro r. IEEE/ACM Trans Comput Biol Bioinform. 2019 Sep-Oct;16(5):1448-1458. doi: 10.1109/TCBB.2018.2851200. Epub 2018 Jun 28. IEEE/ACM Trans Comput Biol Bioinform. 2019. PMID: 29994683

9

Nonparametric expression analysis using inferential replicate counts.

Zhu A, Srivastava A, Ibrahim JG, Patro R, Love MI. Zhu A, et al. Among authors: patro r. Nucleic Acids Res. 2019 Oct 10;47(18):e105. doi: 10.1093/nar/gkz622. Nucleic Acids Res. 2019. PMID: 31372651 Free PMC article.

10

Puffaligner : A Fast, Efficient, and Accurate Aligner Based on the Pufferfish Index.

Almodaresi F, Zakeri M, Patro R. Almodaresi F, et al. Among authors: patro r. Bioinformatics. 2021 Jun 12:btab408. doi: 10.1093/bioinformatics/btab408. Online ahead of print. Bioinformatics. 2021. PMID: 34117875

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