Patro R[au] - Search Results

Year	Number of Results
2008	2
2009	1
2011	2
2012	2
2013	3
2014	2
2015	4
2016	3
2017	4
2018	8
2019	5
2020	6
2021	6
2022	6
2023	8

1

Salmon provides fast and bias-aware quantification of transcript expression.

Patro R, Duggal G, Love MI, Irizarry RA, Kingsford C. Patro R, et al. Nat Methods. 2017 Apr;14(4):417-419. doi: 10.1038/nmeth.4197. Epub 2017 Mar 6. Nat Methods. 2017. PMID: 28263959 Free PMC article.

2

Meta-colored compacted de Bruijn graphs.

Pibiri GE, Fan J, Patro R. Pibiri GE, et al. Among authors: patro r. bioRxiv. 2023 Nov 1:2023.07.21.550101. doi: 10.1101/2023.07.21.550101. Preprint. bioRxiv. 2023. PMID: 37546988 Free PMC article.

3

Algorithms meet sequencing technologies - 10th edition of the RECOMB-Seq workshop.

Patro R, Salmela L. Patro R, et al. iScience. 2020 Dec 17;24(1):101956. doi: 10.1016/j.isci.2020.101956. eCollection 2021 Jan 22. iScience. 2020. PMID: 33437938 Free PMC article. Review.

4

Quark enables semi-reference-based compression of RNA-seq data.

Sarkar H, Patro R. Sarkar H, et al. Among authors: patro r. Bioinformatics. 2017 Nov 1;33(21):3380-3386. doi: 10.1093/bioinformatics/btx428. Bioinformatics. 2017. PMID: 29077806

5

Rich Chromatin Structure Prediction from Hi-C Data.

Malik L, Patro R. Malik L, et al. Among authors: patro r. IEEE/ACM Trans Comput Biol Bioinform. 2019 Sep-Oct;16(5):1448-1458. doi: 10.1109/TCBB.2018.2851200. Epub 2018 Jun 28. IEEE/ACM Trans Comput Biol Bioinform. 2019. PMID: 29994683

6

Nonparametric expression analysis using inferential replicate counts.

Zhu A, Srivastava A, Ibrahim JG, Patro R, Love MI. Zhu A, et al. Among authors: patro r. Nucleic Acids Res. 2019 Oct 10;47(18):e105. doi: 10.1093/nar/gkz622. Nucleic Acids Res. 2019. PMID: 31372651 Free PMC article.

7

AGAMEMNON: an Accurate metaGenomics And MEtatranscriptoMics quaNtificatiON analysis suite.

Skoufos G, Almodaresi F, Zakeri M, Paulson JN, Patro R, Hatzigeorgiou AG, Vlachos IS. Skoufos G, et al. Among authors: patro r. Genome Biol. 2022 Jan 31;23(1):39. doi: 10.1186/s13059-022-02610-4. Genome Biol. 2022. PMID: 35101114 Free PMC article.

8

TreeTerminus -creating transcript trees using inferential replicate counts.

Singh NP, Love MI, Patro R. Singh NP, et al. Among authors: patro r. iScience. 2023 May 25;26(6):106961. doi: 10.1016/j.isci.2023.106961. eCollection 2023 Jun 16. iScience. 2023. PMID: 37378336 Free PMC article.

9

Compression of quantification uncertainty for scRNA-seq counts.

Van Buren S, Sarkar H, Srivastava A, Rashid NU, Patro R, Love MI. Van Buren S, et al. Among authors: patro r. Bioinformatics. 2021 Jul 19;37(12):1699-1707. doi: 10.1093/bioinformatics/btab001. Bioinformatics. 2021. PMID: 33471073 Free PMC article.

10

Improved data-driven likelihood factorizations for transcript abundance estimation.

Zakeri M, Srivastava A, Almodaresi F, Patro R. Zakeri M, et al. Among authors: patro r. Bioinformatics. 2017 Jul 15;33(14):i142-i151. doi: 10.1093/bioinformatics/btx262. Bioinformatics. 2017. PMID: 28881996 Free PMC article.

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