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Year Number of Results
2012 1
2013 1
2017 1
2018 2
2019 3
2020 3
2021 3
2022 2
2023 1
2024 2
2025 0

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17 results

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Page 1
Causal discovery for the microbiome.
Corander J, Hanage WP, Pensar J. Corander J, et al. Among authors: pensar j. Lancet Microbe. 2022 Nov;3(11):e881-e887. doi: 10.1016/S2666-5247(22)00186-0. Epub 2022 Sep 21. Lancet Microbe. 2022. PMID: 36152674 Free PMC article. Review.
Machine learning to attribute the source of Campylobacter infections in the United States: A retrospective analysis of national surveillance data.
Pascoe B, Futcher G, Pensar J, Bayliss SC, Mourkas E, Calland JK, Hitchings MD, Joseph LA, Lane CG, Greenlee T, Arning N, Wilson DJ, Jolley KA, Corander J, Maiden MCJ, Parker CT, Cooper KK, Rose EB, Hiett K, Bruce BB, Sheppard SK. Pascoe B, et al. Among authors: pensar j. J Infect. 2024 Nov;89(5):106265. doi: 10.1016/j.jinf.2024.106265. Epub 2024 Sep 7. J Infect. 2024. PMID: 39245152 Free article.
SuperDCA for genome-wide epistasis analysis.
Puranen S, Pesonen M, Pensar J, Xu YY, Lees JA, Bentley SD, Croucher NJ, Corander J. Puranen S, et al. Among authors: pensar j. Microb Genom. 2018 Jun;4(6):e000184. doi: 10.1099/mgen.0.000184. Epub 2018 May 29. Microb Genom. 2018. PMID: 29813016 Free PMC article.
Co-evolutionary Signals Identify Burkholderia pseudomallei Survival Strategies in a Hostile Environment.
Chewapreecha C, Pensar J, Chattagul S, Pesonen M, Sangphukieo A, Boonklang P, Potisap C, Koosakulnirand S, Feil EJ, Dunachie S, Chantratita N, Limmathurotsakul D, Peacock SJ, Day NPJ, Parkhill J, Thomson NR, Sermswan RW, Corander J. Chewapreecha C, et al. Among authors: pensar j. Mol Biol Evol. 2022 Jan 7;39(1):msab306. doi: 10.1093/molbev/msab306. Mol Biol Evol. 2022. PMID: 34662416 Free PMC article.
Pangenome-spanning epistasis and coselection analysis via de Bruijn graphs.
Kuronen J, Horsfield ST, Pöntinen AK, Mallawaarachchi S, Arredondo-Alonso S, Thorpe H, Gladstone RA, Willems RJL, Bentley SD, Croucher NJ, Pensar J, Lees JA, Tonkin-Hill G, Corander J. Kuronen J, et al. Among authors: pensar j. Genome Res. 2024 Aug 20;34(7):1081-1088. doi: 10.1101/gr.278485.123. Genome Res. 2024. PMID: 39134411 Free PMC article.
Genome evolution and the emergence of pathogenicity in avian Escherichia coli.
Mageiros L, Méric G, Bayliss SC, Pensar J, Pascoe B, Mourkas E, Calland JK, Yahara K, Murray S, Wilkinson TS, Williams LK, Hitchings MD, Porter J, Kemmett K, Feil EJ, Jolley KA, Williams NJ, Corander J, Sheppard SK. Mageiros L, et al. Among authors: pensar j. Nat Commun. 2021 Feb 3;12(1):765. doi: 10.1038/s41467-021-20988-w. Nat Commun. 2021. PMID: 33536414 Free PMC article.
Genome-wide epistasis and co-selection study using mutual information.
Pensar J, Puranen S, Arnold B, MacAlasdair N, Kuronen J, Tonkin-Hill G, Pesonen M, Xu Y, Sipola A, Sánchez-Busó L, Lees JA, Chewapreecha C, Bentley SD, Harris SR, Parkhill J, Croucher NJ, Corander J. Pensar J, et al. Nucleic Acids Res. 2019 Oct 10;47(18):e112. doi: 10.1093/nar/gkz656. Nucleic Acids Res. 2019. PMID: 31361894 Free PMC article.
Disease-associated genotypes of the commensal skin bacterium Staphylococcus epidermidis.
Méric G, Mageiros L, Pensar J, Laabei M, Yahara K, Pascoe B, Kittiwan N, Tadee P, Post V, Lamble S, Bowden R, Bray JE, Morgenstern M, Jolley KA, Maiden MCJ, Feil EJ, Didelot X, Miragaia M, de Lencastre H, Moriarty TF, Rohde H, Massey R, Mack D, Corander J, Sheppard SK. Méric G, et al. Among authors: pensar j. Nat Commun. 2018 Nov 28;9(1):5034. doi: 10.1038/s41467-018-07368-7. Nat Commun. 2018. PMID: 30487573 Free PMC article.
The immuneML ecosystem for machine learning analysis of adaptive immune receptor repertoires.
Pavlović M, Scheffer L, Motwani K, Kanduri C, Kompova R, Vazov N, Waagan K, Bernal FLM, Costa AA, Corrie B, Akbar R, Al Hajj GS, Balaban G, Brusko TM, Chernigovskaya M, Christley S, Cowell LG, Frank R, Grytten I, Gundersen S, Haff IH, Hovig E, Hsieh PH, Klambauer G, Kuijjer ML, Lund-Andersen C, Martini A, Minotto T, Pensar J, Rand K, Riccardi E, Robert PA, Rocha A, Slabodkin A, Snapkov I, Sollid LM, Titov D, Weber CR, Widrich M, Yaari G, Greiff V, Sandve GK. Pavlović M, et al. Among authors: pensar j. Nat Mach Intell. 2021 Nov;3(11):936-944. doi: 10.1038/s42256-021-00413-z. Epub 2021 Nov 16. Nat Mach Intell. 2021. PMID: 37396030 Free PMC article.
Author Correction: Genome evolution and the emergence of pathogenicity in avian Escherichia coli.
Mageiros L, Méric G, Bayliss SC, Pensar J, Pascoe B, Mourkas E, Calland JK, Yahara K, Murray S, Wilkinson TS, Williams LK, Hitchings MD, Porter J, Kemmett K, Feil EJ, Jolley KA, Williams NJ, Corander J, Sheppard SK. Mageiros L, et al. Among authors: pensar j. Nat Commun. 2021 Mar 22;12(1):1934. doi: 10.1038/s41467-021-22238-5. Nat Commun. 2021. PMID: 33753730 Free PMC article. No abstract available.
17 results