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Genome reorganization during emergence of host-associated Mycobacterium abscessus.

Bohr LL, Youngblom MA, Eldholm V, Pepperell CS. Bohr LL, et al. Among authors: pepperell cs. Microb Genom. 2021 Dec;7(12):000706. doi: 10.1099/mgen.0.000706. Microb Genom. 2021. PMID: 34874249 Free PMC article.

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Lateral Gene Transfer Shapes Diversity of Gardnerella spp.

Bohr LL, Mortimer TD, Pepperell CS. Bohr LL, et al. Among authors: pepperell cs. Front Cell Infect Microbiol. 2020 Jun 23;10:293. doi: 10.3389/fcimb.2020.00293. eCollection 2020. Front Cell Infect Microbiol. 2020. PMID: 32656099 Free PMC article.

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Tuberculosis sanatorium treatment at the advent of the chemotherapy era.

Zwick ED, Pepperell CS. Zwick ED, et al. Among authors: pepperell cs. BMC Infect Dis. 2020 Nov 11;20(1):831. doi: 10.1186/s12879-020-05539-w. BMC Infect Dis. 2020. PMID: 33176701 Free PMC article.

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Representing Tuberculosis Transmission with Complex Contagion: An Agent-Based Simulation Modeling Approach.

Zwick ED, Pepperell CS, Alagoz O. Zwick ED, et al. Among authors: pepperell cs. Med Decis Making. 2021 Aug;41(6):641-652. doi: 10.1177/0272989X211007842. Epub 2021 Apr 27. Med Decis Making. 2021. PMID: 33904344 Free PMC article.

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Revealing fine-scale spatiotemporal differences in SARS-CoV-2 introduction and spread.

Moreno GK, Braun KM, Riemersma KK, Martin MA, Halfmann PJ, Crooks CM, Prall T, Baker D, Baczenas JJ, Heffron AS, Ramuta M, Khubbar M, Weiler AM, Accola MA, Rehrauer WM, O'Connor SL, Safdar N, Pepperell CS, Dasu T, Bhattacharyya S, Kawaoka Y, Koelle K, O'Connor DH, Friedrich TC. Moreno GK, et al. Among authors: pepperell cs. Nat Commun. 2020 Nov 3;11(1):5558. doi: 10.1038/s41467-020-19346-z. Nat Commun. 2020. PMID: 33144575 Free PMC article.

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Transcriptional and Translational Responsiveness of the Neisseria gonorrhoeae Type IV Secretion System to Conditions of Host Infections.

Callaghan MM, Klimowicz AK, Shockey AC, Kane J, Pepperell CS, Dillard JP. Callaghan MM, et al. Among authors: pepperell cs. Infect Immun. 2021 Nov 16;89(12):e0051921. doi: 10.1128/IAI.00519-21. Epub 2021 Sep 27. Infect Immun. 2021. PMID: 34581604 Free PMC article.

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Distinct patterns of SARS-CoV-2 transmission in two nearby communities in Wisconsin, USA.

Moreno GK, Braun KM, Riemersma KK, Martin MA, Halfmann PJ, Crooks CM, Prall T, Baker D, Baczenas JJ, Heffron AS, Ramuta M, Khubbar M, Weiler AM, Accola MA, Rehrauer WM, O'Connor SL, Safdar N, Pepperell CS, Dasu T, Bhattacharyya S, Kawaoka Y, Koelle K, O'Connor DH, Friedrich TC. Moreno GK, et al. Among authors: pepperell cs. medRxiv. 2020 Jul 10:2020.07.09.20149104. doi: 10.1101/2020.07.09.20149104. Preprint. medRxiv. 2020. PMID: 32676620 Free PMC article.

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A molecular portrait of maternal sepsis from Byzantine Troy.

Devault AM, Mortimer TD, Kitchen A, Kiesewetter H, Enk JM, Golding GB, Southon J, Kuch M, Duggan AT, Aylward W, Gardner SN, Allen JE, King AM, Wright G, Kuroda M, Kato K, Briggs DE, Fornaciari G, Holmes EC, Poinar HN, Pepperell CS. Devault AM, et al. Among authors: pepperell cs. Elife. 2017 Jan 10;6:e20983. doi: 10.7554/eLife.20983. Elife. 2017. PMID: 28072390 Free PMC article.

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Multiple exposures, reinfection and risk of progression to active tuberculosis.

Ackley SF, Lee RS, Worden L, Zwick E, Porco TC, Behr MA, Pepperell CS. Ackley SF, et al. Among authors: pepperell cs. R Soc Open Sci. 2019 Mar 20;6(3):180999. doi: 10.1098/rsos.180999. eCollection 2019 Mar. R Soc Open Sci. 2019. PMID: 31031990 Free PMC article.

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Estimation of Gene Insertion/Deletion Rates with Missing Data.

Dang UJ, Devault AM, Mortimer TD, Pepperell CS, Poinar HN, Golding GB. Dang UJ, et al. Among authors: pepperell cs. Genetics. 2016 Oct;204(2):513-529. doi: 10.1534/genetics.116.191973. Epub 2016 Aug 26. Genetics. 2016. PMID: 27565162 Free PMC article.

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