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2022 1
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On weighted k-mer dictionaries.
Pibiri GE. Pibiri GE. Algorithms Mol Biol. 2023 Jun 17;18(1):3. doi: 10.1186/s13015-023-00226-2. Algorithms Mol Biol. 2023. PMID: 37328897 Free PMC article.
Sparse and skew hashing of K-mers.
Pibiri GE. Pibiri GE. Bioinformatics. 2022 Jun 24;38(Suppl 1):i185-i194. doi: 10.1093/bioinformatics/btac245. Bioinformatics. 2022. PMID: 35758794 Free PMC article.
Meta-colored compacted de Bruijn graphs.
Pibiri GE, Fan J, Patro R. Pibiri GE, et al. bioRxiv. 2023 Nov 1:2023.07.21.550101. doi: 10.1101/2023.07.21.550101. Preprint. bioRxiv. 2023. PMID: 37546988 Free PMC article.
Locality-preserving minimal perfect hashing of k-mers.
Pibiri GE, Shibuya Y, Limasset A. Pibiri GE, et al. Bioinformatics. 2023 Jun 30;39(Supplement_1):i534-i543. doi: 10.1093/bioinformatics/btad219. Bioinformatics. 2023. PMID: 37387137 Free PMC article.
Matchtigs: minimum plain text representation of k-mer sets.
Schmidt S, Khan S, Alanko JN, Pibiri GE, Tomescu AI. Schmidt S, et al. Among authors: pibiri ge. Genome Biol. 2023 Jun 9;24(1):136. doi: 10.1186/s13059-023-02968-z. Genome Biol. 2023. PMID: 37296461 Free PMC article.