Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation

Search Page

Filters

My NCBI Filters

Results by year

Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2009 2
2014 1
2015 2
2017 4
2018 1
2019 1
2020 3
2021 3
2023 0

Text availability

Article attribute

Article type

Publication date

Search Results

15 results

Results by year

Filters applied: . Clear all
Page 1
Relative Suffix Trees.
Farruggia A, Gagie T, Navarro G, Puglisi SJ, Sirén J. Farruggia A, et al. Among authors: puglisi sj. Comput J. 2018 May;61(5):773-788. doi: 10.1093/comjnl/bxx108. Epub 2017 Nov 21. Comput J. 2018. PMID: 29795706 Free PMC article.
Succinct dynamic de Bruijn graphs.
Alipanahi B, Kuhnle A, Puglisi SJ, Salmela L, Boucher C. Alipanahi B, et al. Among authors: puglisi sj. Bioinformatics. 2021 Aug 4;37(14):1946-1952. doi: 10.1093/bioinformatics/btaa546. Bioinformatics. 2021. PMID: 32462192 Free PMC article.
Succinct colored de Bruijn graphs.
Muggli MD, Bowe A, Noyes NR, Morley PS, Belk KE, Raymond R, Gagie T, Puglisi SJ, Boucher C. Muggli MD, et al. Among authors: puglisi sj. Bioinformatics. 2017 Oct 15;33(20):3181-3187. doi: 10.1093/bioinformatics/btx067. Bioinformatics. 2017. PMID: 28200001 Free PMC article.
Document retrieval on repetitive string collections.
Gagie T, Hartikainen A, Karhu K, Kärkkäinen J, Navarro G, Puglisi SJ, Sirén J. Gagie T, et al. Among authors: puglisi sj. Inf Retr Boston. 2017;20(3):253-291. doi: 10.1007/s10791-017-9297-7. Epub 2017 Apr 1. Inf Retr Boston. 2017. PMID: 28596702 Free PMC article.
Fast and accurate correction of optical mapping data via spaced seeds.
Salmela L, Mukherjee K, Puglisi SJ, Muggli MD, Boucher C. Salmela L, et al. Among authors: puglisi sj. Bioinformatics. 2020 May 1;36(9):2974. doi: 10.1093/bioinformatics/btaa101. Bioinformatics. 2020. PMID: 32187358 Free PMC article. No abstract available.
Searching and Indexing Genomic Databases via Kernelization.
Gagie T, Puglisi SJ. Gagie T, et al. Among authors: puglisi sj. Front Bioeng Biotechnol. 2015 Feb 9;3:12. doi: 10.3389/fbioe.2015.00012. eCollection 2015. Front Bioeng Biotechnol. 2015. PMID: 25710001 Free PMC article. Review.
Hybrid indexes for repetitive datasets.
Ferrada H, Gagie T, Hirvola T, Puglisi SJ. Ferrada H, et al. Among authors: puglisi sj. Philos Trans A Math Phys Eng Sci. 2014 Apr 21;372(2016):20130137. doi: 10.1098/rsta.2013.0137. Print 2014 May 28. Philos Trans A Math Phys Eng Sci. 2014. PMID: 24751871
SHREC: a short-read error correction method.
Schröder J, Schröder H, Puglisi SJ, Sinha R, Schmidt B. Schröder J, et al. Among authors: puglisi sj. Bioinformatics. 2009 Sep 1;25(17):2157-63. doi: 10.1093/bioinformatics/btp379. Epub 2009 Jun 19. Bioinformatics. 2009. PMID: 19542152
15 results