Pupko T[au] - Search Results

Year	Number of Results
1999	1
2000	1
2001	1
2002	5
2003	2
2004	3
2005	8
2006	6
2007	11
2008	6
2009	5
2010	9
2011	9
2012	9
2013	5
2014	5
2015	6
2016	6
2017	6
2018	9
2019	7
2020	4
2021	8
2022	9
2023	2

1

Type III secretion system effectors form robust and flexible intracellular virulence networks.

Ruano-Gallego D, Sanchez-Garrido J, Kozik Z, Núñez-Berrueco E, Cepeda-Molero M, Mullineaux-Sanders C, Naemi Baghshomali Y, Slater SL, Wagner N, Glegola-Madejska I, Roumeliotis TI, Pupko T, Fernández LÁ, Rodríguez-Patón A, Choudhary JS, Frankel G. Ruano-Gallego D, et al. Among authors: pupko t. Science. 2021 Mar 12;371(6534):eabc9531. doi: 10.1126/science.abc9531. Science. 2021. PMID: 33707240

2

GenomeFLTR: filtering reads made easy.

Dotan E, Alburquerque M, Wygoda E, Huchon D, Pupko T. Dotan E, et al. Among authors: pupko t. Nucleic Acids Res. 2023 May 13:gkad410. doi: 10.1093/nar/gkad410. Online ahead of print. Nucleic Acids Res. 2023. PMID: 37177997

3

An Approximate Bayesian Computation Approach for Modeling Genome Rearrangements.

Moshe A, Wygoda E, Ecker N, Loewenthal G, Avram O, Israeli O, Hazkani-Covo E, Pe'er I, Pupko T. Moshe A, et al. Among authors: pupko t. Mol Biol Evol. 2022 Nov 3;39(11):msac231. doi: 10.1093/molbev/msac231. Mol Biol Evol. 2022. PMID: 36282896 Free PMC article.

4

State-of the art methodologies dictate new standards for phylogenetic analysis.

Anisimova M, Liberles DA, Philippe H, Provan J, Pupko T, von Haeseler A. Anisimova M, et al. Among authors: pupko t. BMC Evol Biol. 2013 Aug 1;13:161. doi: 10.1186/1471-2148-13-161. BMC Evol Biol. 2013. PMID: 23914788 Free PMC article. Review.

5

Predicting Type III Effector Proteins Using the Effectidor Web Server.

Wagner N, Teper D, Pupko T. Wagner N, et al. Among authors: pupko t. Methods Mol Biol. 2022;2427:25-36. doi: 10.1007/978-1-0716-1971-1_3. Methods Mol Biol. 2022. PMID: 35619022

6

Multiple Sequence Alignment Averaging Improves Phylogeny Reconstruction.

Ashkenazy H, Sela I, Levy Karin E, Landan G, Pupko T. Ashkenazy H, et al. Among authors: pupko t. Syst Biol. 2019 Jan 1;68(1):117-130. doi: 10.1093/sysbio/syy036. Syst Biol. 2019. PMID: 29771363 Free PMC article.

7

PASA: Proteomic analysis of serum antibodies web server.

Avram O, Kigel A, Vaisman-Mentesh A, Kligsberg S, Rosenstein S, Dror Y, Pupko T, Wine Y. Avram O, et al. Among authors: pupko t. PLoS Comput Biol. 2021 Jan 25;17(1):e1008607. doi: 10.1371/journal.pcbi.1008607. eCollection 2021 Jan. PLoS Comput Biol. 2021. PMID: 33493161 Free PMC article.

8

Harnessing machine learning to guide phylogenetic-tree search algorithms.

Azouri D, Abadi S, Mansour Y, Mayrose I, Pupko T. Azouri D, et al. Among authors: pupko t. Nat Commun. 2021 Mar 31;12(1):1983. doi: 10.1038/s41467-021-22073-8. Nat Commun. 2021. PMID: 33790270 Free PMC article.

9

Machine-learning of complex evolutionary signals improves classification of SNVs.

Labes S, Stupp D, Wagner N, Bloch I, Lotem M, L Lahad E, Polak P, Pupko T, Tabach Y. Labes S, et al. Among authors: pupko t. NAR Genom Bioinform. 2022 Apr 7;4(2):lqac025. doi: 10.1093/nargab/lqac025. eCollection 2022 Jun. NAR Genom Bioinform. 2022. PMID: 35402908 Free PMC article.

10

A Simulation-Based Approach to Statistical Alignment.

Levy Karin E, Ashkenazy H, Hein J, Pupko T. Levy Karin E, et al. Among authors: pupko t. Syst Biol. 2019 Mar 1;68(2):252-266. doi: 10.1093/sysbio/syy059. Syst Biol. 2019. PMID: 30239957

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