Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.


The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation

Search Page


My NCBI Filters

Results by year

Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2005 1
2006 2
2007 1
2008 2
2009 3
2010 4
2011 6
2012 2
2013 5
2014 2
2015 2
2016 1
2017 2
2018 2
2019 2
2020 1
2021 2
2023 3
2024 0

Text availability

Article attribute

Article type

Publication date

Search Results

40 results

Results by year

Filters applied: . Clear all
Page 1
The STRING database in 2023: protein-protein association networks and functional enrichment analyses for any sequenced genome of interest.
Szklarczyk D, Kirsch R, Koutrouli M, Nastou K, Mehryary F, Hachilif R, Gable AL, Fang T, Doncheva NT, Pyysalo S, Bork P, Jensen LJ, von Mering C. Szklarczyk D, et al. Among authors: pyysalo s. Nucleic Acids Res. 2023 Jan 6;51(D1):D638-D646. doi: 10.1093/nar/gkac1000. Nucleic Acids Res. 2023. PMID: 36370105 Free PMC article.
Dependency parsing of biomedical text with BERT.
Kanerva J, Ginter F, Pyysalo S. Kanerva J, et al. Among authors: pyysalo s. BMC Bioinformatics. 2020 Dec 29;21(Suppl 23):580. doi: 10.1186/s12859-020-03905-8. BMC Bioinformatics. 2020. PMID: 33372589 Free PMC article.
Complex event extraction at PubMed scale.
Björne J, Ginter F, Pyysalo S, Tsujii J, Salakoski T. Björne J, et al. Among authors: pyysalo s. Bioinformatics. 2010 Jun 15;26(12):i382-90. doi: 10.1093/bioinformatics/btq180. Bioinformatics. 2010. PMID: 20529932 Free PMC article.
LION LBD: a literature-based discovery system for cancer biology.
Pyysalo S, Baker S, Ali I, Haselwimmer S, Shah T, Young A, Guo Y, Högberg J, Stenius U, Narita M, Korhonen A. Pyysalo S, et al. Bioinformatics. 2019 May 1;35(9):1553-1561. doi: 10.1093/bioinformatics/bty845. Bioinformatics. 2019. PMID: 30304355 Free PMC article.
Overview of DrugProt task at BioCreative VII: data and methods for large-scale text mining and knowledge graph generation of heterogenous chemical-protein relations.
Miranda-Escalada A, Mehryary F, Luoma J, Estrada-Zavala D, Gasco L, Pyysalo S, Valencia A, Krallinger M. Miranda-Escalada A, et al. Among authors: pyysalo s. Database (Oxford). 2023 Nov 28;2023:baad080. doi: 10.1093/database/baad080. Database (Oxford). 2023. PMID: 38015956 Free PMC article.
40 results