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cloudrnaSPAdes: Isoform assembly using bulk barcoded RNA sequencing data.
Meleshko D, Prjbelski AD, Raiko M, Tomescu AI, Tilgner H, Hajirasouliha I. Meleshko D, et al. Among authors: raiko m. bioRxiv [Preprint]. 2023 Jul 27:2023.07.25.550587. doi: 10.1101/2023.07.25.550587. bioRxiv. 2023. PMID: 37546844 Free PMC article. Updated. Preprint.
plasmidSPAdes: assembling plasmids from whole genome sequencing data.
Antipov D, Hartwick N, Shen M, Raiko M, Lapidus A, Pevzner PA. Antipov D, et al. Among authors: raiko m. Bioinformatics. 2016 Nov 15;32(22):3380-3387. doi: 10.1093/bioinformatics/btw493. Epub 2016 Jul 27. Bioinformatics. 2016. PMID: 27466620