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Transcriptional regulation of nitrogen-associated metabolism and growth.

Gaudinier A, Rodriguez-Medina J, Zhang L, Olson A, Liseron-Monfils C, Bågman AM, Foret J, Abbitt S, Tang M, Li B, Runcie DE, Kliebenstein DJ, Shen B, Frank MJ, Ware D, Brady SM. Gaudinier A, et al. Among authors: runcie de. Nature. 2018 Nov;563(7730):259-264. doi: 10.1038/s41586-018-0656-3. Epub 2018 Oct 24. Nature. 2018. PMID: 30356219 Free article.

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Translational regulation contributes to the elevated CO₂ response in two Solanum species.

Gray SB, Rodriguez-Medina J, Rusoff S, Toal TW, Kajala K, Runcie DE, Brady SM. Gray SB, et al. Among authors: runcie de. Plant J. 2020 Apr;102(2):383-397. doi: 10.1111/tpj.14632. Epub 2020 Jan 16. Plant J. 2020. PMID: 31797460 Free PMC article.

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Fast and flexible linear mixed models for genome-wide genetics.

Runcie DE, Crawford L. Runcie DE, et al. PLoS Genet. 2019 Feb 8;15(2):e1007978. doi: 10.1371/journal.pgen.1007978. eCollection 2019 Feb. PLoS Genet. 2019. PMID: 30735486 Free PMC article.

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Functional variants of DOG1 control seed chilling responses and variation in seasonal life-history strategies in Arabidopsis thaliana.

Martínez-Berdeja A, Stitzer MC, Taylor MA, Okada M, Ezcurra E, Runcie DE, Schmitt J. Martínez-Berdeja A, et al. Among authors: runcie de. Proc Natl Acad Sci U S A. 2020 Feb 4;117(5):2526-2534. doi: 10.1073/pnas.1912451117. Epub 2020 Jan 21. Proc Natl Acad Sci U S A. 2020. PMID: 31964817 Free PMC article.

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VARIABLE PRIORITIZATION IN NONLINEAR BLACK BOX METHODS: A GENETIC ASSOCIATION CASE STUDY¹.

Crawford L, Flaxman SR, Runcie DE, West M. Crawford L, et al. Among authors: runcie de. Ann Appl Stat. 2019 Jun;13(2):958-989. doi: 10.1214/18-aoas1222. Epub 2019 Jun 17. Ann Appl Stat. 2019. PMID: 32542104 Free PMC article.

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Large-effect flowering time mutations reveal conditionally adaptive paths through fitness landscapes in Arabidopsis thaliana.

Taylor MA, Wilczek AM, Roe JL, Welch SM, Runcie DE, Cooper MD, Schmitt J. Taylor MA, et al. Among authors: runcie de. Proc Natl Acad Sci U S A. 2019 Sep 3;116(36):17890-17899. doi: 10.1073/pnas.1902731116. Epub 2019 Aug 16. Proc Natl Acad Sci U S A. 2019. PMID: 31420516 Free PMC article.

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Implications of genetic heterogeneity for plant translocation during ecological restoration.

Crow TM, Buerkle CA, Runcie DE, Hufford KM. Crow TM, et al. Among authors: runcie de. Ecol Evol. 2021 Jan 16;11(3):1100-1110. doi: 10.1002/ece3.6978. eCollection 2021 Feb. Ecol Evol. 2021. PMID: 33598117 Free PMC article.

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MegaLMM: Mega-scale linear mixed models for genomic predictions with thousands of traits.

Runcie DE, Qu J, Cheng H, Crawford L. Runcie DE, et al. Genome Biol. 2021 Jul 23;22(1):213. doi: 10.1186/s13059-021-02416-w. Genome Biol. 2021. PMID: 34301310 Free PMC article.

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Innovation, conservation, and repurposing of gene function in root cell type development.

Kajala K, Gouran M, Shaar-Moshe L, Mason GA, Rodriguez-Medina J, Kawa D, Pauluzzi G, Reynoso M, Canto-Pastor A, Manzano C, Lau V, Artur MAS, West DA, Gray SB, Borowsky AT, Moore BP, Yao AI, Morimoto KW, Bajic M, Formentin E, Nirmal NA, Rodriguez A, Pasha A, Deal RB, Kliebenstein DJ, Hvidsten TR, Provart NJ, Sinha NR, Runcie DE, Bailey-Serres J, Brady SM. Kajala K, et al. Among authors: runcie de. Cell. 2021 Jun 10;184(12):3333-3348.e19. doi: 10.1016/j.cell.2021.04.024. Epub 2021 May 18. Cell. 2021. PMID: 34010619 Free article.

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Genomic Characterization of the Evolutionary Potential of the Sea Urchin Strongylocentrotus droebachiensis Facing Ocean Acidification.

Runcie DE, Dorey N, Garfield DA, Stumpp M, Dupont S, Wray GA. Runcie DE, et al. Genome Biol Evol. 2016 Dec 1;8(12):3672-3684. doi: 10.1093/gbe/evw272. Genome Biol Evol. 2016. PMID: 28082601 Free PMC article.

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