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2015 1
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2019 3
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MCell-R: A Particle-Resolution Network-Free Spatial Modeling Framework.
Tapia JJ, Saglam AS, Czech J, Kuczewski R, Bartol TM, Sejnowski TJ, Faeder JR. Tapia JJ, et al. Among authors: saglam as. Methods Mol Biol. 2019;1945:203-229. doi: 10.1007/978-1-4939-9102-0_9. Methods Mol Biol. 2019. PMID: 30945248 Free PMC article.
Combination treatment optimization using a pan-cancer pathway model.
Schmucker R, Farina G, Faeder J, Fröhlich F, Saglam AS, Sandholm T. Schmucker R, et al. Among authors: saglam as. PLoS Comput Biol. 2021 Dec 28;17(12):e1009689. doi: 10.1371/journal.pcbi.1009689. eCollection 2021 Dec. PLoS Comput Biol. 2021. PMID: 34962919 Free PMC article.
Iterative community-driven development of a SARS-CoV-2 tissue simulator.
Getz M, Wang Y, An G, Asthana M, Becker A, Cockrell C, Collier N, Craig M, Davis CL, Faeder JR, Ford Versypt AN, Mapder T, Gianlupi JF, Glazier JA, Hamis S, Heiland R, Hillen T, Hou D, Islam MA, Jenner AL, Kurtoglu F, Larkin CI, Liu B, Macfarlane F, Maygrundter P, Morel PA, Narayanan A, Ozik J, Pienaar E, Rangamani P, Saglam AS, Shoemaker JE, Smith AM, Weaver JJA, Macklin P. Getz M, et al. Among authors: saglam as. bioRxiv [Preprint]. 2021 Nov 10:2020.04.02.019075. doi: 10.1101/2020.04.02.019075. bioRxiv. 2021. PMID: 32511322 Free PMC article. Preprint.
BioSimulators: a central registry of simulation engines and services for recommending specific tools.
Shaikh B, Smith LP, Vasilescu D, Marupilla G, Wilson M, Agmon E, Agnew H, Andrews SS, Anwar A, Beber ME, Bergmann FT, Brooks D, Brusch L, Calzone L, Choi K, Cooper J, Detloff J, Drawert B, Dumontier M, Ermentrout GB, Faeder JR, Freiburger AP, Fröhlich F, Funahashi A, Garny A, Gennari JH, Gleeson P, Goelzer A, Haiman Z, Hasenauer J, Hellerstein JL, Hermjakob H, Hoops S, Ison JC, Jahn D, Jakubowski HV, Jordan R, Kalaš M, König M, Liebermeister W, Sheriff RSM, Mandal S, McDougal R, Medley JK, Mendes P, Müller R, Myers CJ, Naldi A, Nguyen TVN, Nickerson DP, Olivier BG, Patoliya D, Paulevé L, Petzold LR, Priya A, Rampadarath AK, Rohwer JM, Saglam AS, Singh D, Sinha A, Snoep J, Sorby H, Spangler R, Starruß J, Thomas PJ, van Niekerk D, Weindl D, Zhang F, Zhukova A, Goldberg AP, Schaff JC, Blinov ML, Sauro HM, Moraru II, Karr JR. Shaikh B, et al. Among authors: saglam as. Nucleic Acids Res. 2022 Jul 5;50(W1):W108-W114. doi: 10.1093/nar/gkac331. Nucleic Acids Res. 2022. PMID: 35524558 Free PMC article.
A Suite of Tutorials for the WESTPA 2.0 Rare-Events Sampling Software [Article v2.0].
Bogetti AT, Leung JMG, Russo JD, Zhang S, Thompson JP, Saglam AS, Ray D, Mostofian B, Pratt AJ, Abraham RC, Harrison PO, Dudek M, Torrillo PA, DeGrave AJ, Adhikari U, Faeder JR, Andricioaei I, Adelman JL, Zwier MC, LeBard DN, Zuckerman DM, Chong LT. Bogetti AT, et al. Among authors: saglam as. Living J Comput Mol Sci. 2023;5(1):1655. doi: 10.33011/livecoms.5.1.1655. Living J Comput Mol Sci. 2023. PMID: 37200895 Free PMC article.
Do small for gestational age fetuses have placental pathologies?
Calis P, Gundogdu AC, Turgut E, Seymen CM, Saglam AS, Karcaaltincaba D, Kaplanoglu GT. Calis P, et al. Among authors: saglam as. Arch Gynecol Obstet. 2024 Apr;309(4):1305-1313. doi: 10.1007/s00404-023-06989-8. Epub 2023 Mar 18. Arch Gynecol Obstet. 2024. PMID: 36933038
A Suite of Tutorials for the WESTPA Rare-Events Sampling Software [Article v1.0].
Bogetti AT, Mostofian B, Dickson A, Pratt AJ, Saglam AS, Harrison PO, Adelman JL, Dudek M, Torrillo PA, DeGrave AJ, Adhikari U, Zwier MC, Zuckerman DM, Chong LT. Bogetti AT, et al. Among authors: saglam as. Living J Comput Mol Sci. 2019;1(2):10607. doi: 10.33011/livecoms.1.2.10607. Epub 2019 Oct 4. Living J Comput Mol Sci. 2019. PMID: 32395705 Free PMC article.
17 results