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Fast nanopore sequencing data analysis with SLOW5.
Gamaarachchi H, Samarakoon H, Jenner SP, Ferguson JM, Amos TG, Hammond JM, Saadat H, Smith MA, Parameswaran S, Deveson IW. Gamaarachchi H, et al. Among authors: samarakoon h. Nat Biotechnol. 2022 Jul;40(7):1026-1029. doi: 10.1038/s41587-021-01147-4. Epub 2022 Jan 3. Nat Biotechnol. 2022. PMID: 34980914 Free PMC article.
Accelerated nanopore basecalling with SLOW5 data format.
Samarakoon H, Ferguson JM, Gamaarachchi H, Deveson IW. Samarakoon H, et al. Bioinformatics. 2023 Jun 1;39(6):btad352. doi: 10.1093/bioinformatics/btad352. Bioinformatics. 2023. PMID: 37252813 Free PMC article.
Chloroplast genome, nuclear ITS regions, mitogenome regions, and Skmer analysis resolved the genetic relationship among Cinnamomum species in Sri Lanka.
Bandaranayake PCG, Naranpanawa N, Chandrasekara CHWMRB, Samarakoon H, Lokuge S, Jayasundara S, Bandaranayake AU, Pushpakumara DKNG, Wijesundara DSA. Bandaranayake PCG, et al. Among authors: samarakoon h. PLoS One. 2023 Sep 20;18(9):e0291763. doi: 10.1371/journal.pone.0291763. eCollection 2023. PLoS One. 2023. PMID: 37729154 Free PMC article.