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2008 1
2019 1
2021 1
2022 3
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Unlocking capacities of viral genomics for the COVID-19 pandemic response.
Knyazev S, Chhugani K, Ayyala R, Singh H, Karthikeyan S, Deshpande D, Comarova Z, Lu A, Sarwal V, Porozov Y, Wu A, Abedalthagafi M, Nagaraj S, Smith A, Skums P, Ladner J, Lam TT, Wu N, Zelikovsky A, Knight R, Crandall K, Mangul S. Knyazev S, et al. Among authors: sarwal v. ArXiv. 2021 Apr 28:arXiv:2104.14005v1. Preprint. ArXiv. 2021. PMID: 33948451 Free PMC article.
Traumatic subarachnoid-pleural fistula.
Sarwal V, Suri RK, Sharma OP, Baruah A, Singhi P, Gill S, Bapuraj JR. Sarwal V, et al. Ann Thorac Surg. 1996 Dec;62(6):1622-6. doi: 10.1016/s0003-4975(96)00684-4. Ann Thorac Surg. 1996. PMID: 8957362 Review.
Critical Assessment of Metagenome Interpretation: the second round of challenges.
Meyer F, Fritz A, Deng ZL, Koslicki D, Lesker TR, Gurevich A, Robertson G, Alser M, Antipov D, Beghini F, Bertrand D, Brito JJ, Brown CT, Buchmann J, Buluç A, Chen B, Chikhi R, Clausen PTLC, Cristian A, Dabrowski PW, Darling AE, Egan R, Eskin E, Georganas E, Goltsman E, Gray MA, Hansen LH, Hofmeyr S, Huang P, Irber L, Jia H, Jørgensen TS, Kieser SD, Klemetsen T, Kola A, Kolmogorov M, Korobeynikov A, Kwan J, LaPierre N, Lemaitre C, Li C, Limasset A, Malcher-Miranda F, Mangul S, Marcelino VR, Marchet C, Marijon P, Meleshko D, Mende DR, Milanese A, Nagarajan N, Nissen J, Nurk S, Oliker L, Paoli L, Peterlongo P, Piro VC, Porter JS, Rasmussen S, Rees ER, Reinert K, Renard B, Robertsen EM, Rosen GL, Ruscheweyh HJ, Sarwal V, Segata N, Seiler E, Shi L, Sun F, Sunagawa S, Sørensen SJ, Thomas A, Tong C, Trajkovski M, Tremblay J, Uritskiy G, Vicedomini R, Wang Z, Wang Z, Wang Z, Warren A, Willassen NP, Yelick K, You R, Zeller G, Zhao Z, Zhu S, Zhu J, Garrido-Oter R, Gastmeier P, Hacquard S, Häußler S, Khaledi A, Maechler F, Mesny F, Radutoiu S, Schulze-Lefert P, Smit N, Strowig T, Bremges A, Sczyrba A, McHardy AC. Meyer F, et al. Among authors: sarwal v. Nat Methods. 2022 Apr;19(4):429-440. doi: 10.1038/s41592-022-01431-4. Epub 2022 Apr 8. Nat Methods. 2022. PMID: 35396482 Free PMC article.
Unlocking capacities of genomics for the COVID-19 response and future pandemics.
Knyazev S, Chhugani K, Sarwal V, Ayyala R, Singh H, Karthikeyan S, Deshpande D, Baykal PI, Comarova Z, Lu A, Porozov Y, Vasylyeva TI, Wertheim JO, Tierney BT, Chiu CY, Sun R, Wu A, Abedalthagafi MS, Pak VM, Nagaraj SH, Smith AL, Skums P, Pasaniuc B, Komissarov A, Mason CE, Bortz E, Lemey P, Kondrashov F, Beerenwinkel N, Lam TT, Wu NC, Zelikovsky A, Knight R, Crandall KA, Mangul S. Knyazev S, et al. Among authors: sarwal v. Nat Methods. 2022 Apr;19(4):374-380. doi: 10.1038/s41592-022-01444-z. Nat Methods. 2022. PMID: 35396471 No abstract available.
Challenges and recommendations to improve the installability and archival stability of omics computational tools.
Mangul S, Mosqueiro T, Abdill RJ, Duong D, Mitchell K, Sarwal V, Hill B, Brito J, Littman RJ, Statz B, Lam AK, Dayama G, Grieneisen L, Martin LS, Flint J, Eskin E, Blekhman R. Mangul S, et al. Among authors: sarwal v. PLoS Biol. 2019 Jun 20;17(6):e3000333. doi: 10.1371/journal.pbio.3000333. eCollection 2019 Jun. PLoS Biol. 2019. PMID: 31220077 Free PMC article.
A comprehensive benchmarking of WGS-based deletion structural variant callers.
Sarwal V, Niehus S, Ayyala R, Kim M, Sarkar A, Chang S, Lu A, Rajkumar N, Darfci-Maher N, Littman R, Chhugani K, Soylev A, Comarova Z, Wesel E, Castellanos J, Chikka R, Distler MG, Eskin E, Flint J, Mangul S. Sarwal V, et al. Brief Bioinform. 2022 Jun 27:bbac221. doi: 10.1093/bib/bbac221. Online ahead of print. Brief Bioinform. 2022. PMID: 35753701