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PEtab-Interoperable specification of parameter estimation problems in systems biology.
Schmiester L, Schälte Y, Bergmann FT, Camba T, Dudkin E, Egert J, Fröhlich F, Fuhrmann L, Hauber AL, Kemmer S, Lakrisenko P, Loos C, Merkt S, Müller W, Pathirana D, Raimúndez E, Refisch L, Rosenblatt M, Stapor PL, Städter P, Wang D, Wieland FG, Banga JR, Timmer J, Villaverde AF, Sahle S, Kreutz C, Hasenauer J, Weindl D. Schmiester L, et al. Among authors: schalte y. PLoS Comput Biol. 2021 Jan 26;17(1):e1008646. doi: 10.1371/journal.pcbi.1008646. eCollection 2021 Jan. PLoS Comput Biol. 2021. PMID: 33497393 Free PMC article.
pyPESTO: a modular and scalable tool for parameter estimation for dynamic models.
Schälte Y, Fröhlich F, Jost PJ, Vanhoefer J, Pathirana D, Stapor P, Lakrisenko P, Wang D, Raimúndez E, Merkt S, Schmiester L, Städter P, Grein S, Dudkin E, Doresic D, Weindl D, Hasenauer J. Schälte Y, et al. Bioinformatics. 2023 Nov 1;39(11):btad711. doi: 10.1093/bioinformatics/btad711. Bioinformatics. 2023. PMID: 37995297 Free PMC article.
Integrative modelling of reported case numbers and seroprevalence reveals time-dependent test efficiency and infectious contacts.
Contento L, Castelletti N, Raimúndez E, Le Gleut R, Schälte Y, Stapor P, Hinske LC, Hoelscher M, Wieser A, Radon K, Fuchs C, Hasenauer J; KoCo19 study group. Contento L, et al. Among authors: schalte y. Epidemics. 2023 Jun;43:100681. doi: 10.1016/j.epidem.2023.100681. Epub 2023 Mar 11. Epidemics. 2023. PMID: 36931114 Free PMC article.
17 results