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Supervised Machine Learning for Population Genetics: A New Paradigm.

Schrider DR, Kern AD. Schrider DR, et al. Trends Genet. 2018 Apr;34(4):301-312. doi: 10.1016/j.tig.2017.12.005. Epub 2018 Jan 10. Trends Genet. 2018. PMID: 29331490 Free PMC article. Review.

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Discoal: flexible coalescent simulations with selection.

Kern AD, Schrider DR. Kern AD, et al. Among authors: schrider dr. Bioinformatics. 2016 Dec 15;32(24):3839-3841. doi: 10.1093/bioinformatics/btw556. Epub 2016 Aug 24. Bioinformatics. 2016. PMID: 27559153 Free PMC article.

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A community-maintained standard library of population genetic models.

Adrion JR, Cole CB, Dukler N, Galloway JG, Gladstein AL, Gower G, Kyriazis CC, Ragsdale AP, Tsambos G, Baumdicker F, Carlson J, Cartwright RA, Durvasula A, Gronau I, Kim BY, McKenzie P, Messer PW, Noskova E, Ortega-Del Vecchyo D, Racimo F, Struck TJ, Gravel S, Gutenkunst RN, Lohmueller KE, Ralph PL, Schrider DR, Siepel A, Kelleher J, Kern AD. Adrion JR, et al. Among authors: schrider dr. Elife. 2020 Jun 23;9:e54967. doi: 10.7554/eLife.54967. Elife. 2020. PMID: 32573438 Free PMC article.

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The Unreasonable Effectiveness of Convolutional Neural Networks in Population Genetic Inference.

Flagel L, Brandvain Y, Schrider DR. Flagel L, et al. Among authors: schrider dr. Mol Biol Evol. 2019 Feb 1;36(2):220-238. doi: 10.1093/molbev/msy224. Mol Biol Evol. 2019. PMID: 30517664 Free PMC article.

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Accurate Inference of Tree Topologies from Multiple Sequence Alignments Using Deep Learning.

Suvorov A, Hochuli J, Schrider DR. Suvorov A, et al. Among authors: schrider dr. Syst Biol. 2020 Mar 1;69(2):221-233. doi: 10.1093/sysbio/syz060. Syst Biol. 2020. PMID: 31504938

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diploS/HIC: An Updated Approach to Classifying Selective Sweeps.

Kern AD, Schrider DR. Kern AD, et al. Among authors: schrider dr. G3 (Bethesda). 2018 May 31;8(6):1959-1970. doi: 10.1534/g3.118.200262. G3 (Bethesda). 2018. PMID: 29626082 Free PMC article.

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Background Selection Does Not Mimic the Patterns of Genetic Diversity Produced by Selective Sweeps.

Schrider DR. Schrider DR. Genetics. 2020 Oct;216(2):499-519. doi: 10.1534/genetics.120.303469. Epub 2020 Aug 26. Genetics. 2020. PMID: 32847814 Free article.

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Gene copy-number polymorphism in nature.

Schrider DR, Hahn MW. Schrider DR, et al. Proc Biol Sci. 2010 Nov 7;277(1698):3213-21. doi: 10.1098/rspb.2010.1180. Epub 2010 Jun 30. Proc Biol Sci. 2010. PMID: 20591863 Free PMC article. Review.

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Supervised machine learning reveals introgressed loci in the genomes of Drosophila simulans and D. sechellia.

Schrider DR, Ayroles J, Matute DR, Kern AD. Schrider DR, et al. PLoS Genet. 2018 Apr 23;14(4):e1007341. doi: 10.1371/journal.pgen.1007341. eCollection 2018 Apr. PLoS Genet. 2018. PMID: 29684059 Free PMC article.

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Combining population genomics and fitness QTLs to identify the genetics of local adaptation in Arabidopsis thaliana.

Price N, Moyers BT, Lopez L, Lasky JR, Monroe JG, Mullen JL, Oakley CG, Lin J, Ågren J, Schrider DR, Kern AD, McKay JK. Price N, et al. Among authors: schrider dr. Proc Natl Acad Sci U S A. 2018 May 8;115(19):5028-5033. doi: 10.1073/pnas.1719998115. Epub 2018 Apr 23. Proc Natl Acad Sci U S A. 2018. PMID: 29686078 Free PMC article.

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