Seif Y[au] - Search Results

Year	Number of Results
2016	1
2018	5
2019	8
2020	5
2021	4
2022	3
2023	0

1

Path to improving the life cycle and quality of genome-scale models of metabolism.

Seif Y, Palsson BØ. Seif Y, et al. Cell Syst. 2021 Sep 22;12(9):842-859. doi: 10.1016/j.cels.2021.06.005. Cell Syst. 2021. PMID: 34555324 Free PMC article. Review.

2

Adaptive laboratory evolution and independent component analysis disentangle complex vancomycin adaptation trajectories.

Fait A, Seif Y, Mikkelsen K, Poudel S, Wells JM, Palsson BO, Ingmer H. Fait A, et al. Among authors: seif y. Proc Natl Acad Sci U S A. 2022 Jul 26;119(30):e2118262119. doi: 10.1073/pnas.2118262119. Epub 2022 Jul 19. Proc Natl Acad Sci U S A. 2022. PMID: 35858453 Free PMC article.

3

Systems Biology and Pangenome of Salmonella O-Antigens.

Seif Y, Monk JM, Machado H, Kavvas E, Palsson BO. Seif Y, et al. mBio. 2019 Aug 27;10(4):e01247-19. doi: 10.1128/mBio.01247-19. mBio. 2019. PMID: 31455646 Free PMC article.

4

Phenotypic response of yeast metabolic network to availability of proteinogenic amino acids.

Simensen V, Seif Y, Almaas E. Simensen V, et al. Among authors: seif y. Front Mol Biosci. 2022 Aug 22;9:963548. doi: 10.3389/fmolb.2022.963548. eCollection 2022. Front Mol Biosci. 2022. PMID: 36072429 Free PMC article.

5

Environmental conditions dictate differential evolution of vancomycin resistance in Staphylococcus aureus.

Machado H, Seif Y, Sakoulas G, Olson CA, Hefner Y, Anand A, Jones YZ, Szubin R, Palsson BO, Nizet V, Feist AM. Machado H, et al. Among authors: seif y. Commun Biol. 2021 Jun 25;4(1):793. doi: 10.1038/s42003-021-02339-z. Commun Biol. 2021. PMID: 34172889 Free PMC article.

6

Metabolic and genetic basis for auxotrophies in Gram-negative species.

Seif Y, Choudhary KS, Hefner Y, Anand A, Yang L, Palsson BO. Seif Y, et al. Proc Natl Acad Sci U S A. 2020 Mar 17;117(11):6264-6273. doi: 10.1073/pnas.1910499117. Epub 2020 Mar 4. Proc Natl Acad Sci U S A. 2020. PMID: 32132208 Free PMC article.

7

Pangenome Analytics Reveal Two-Component Systems as Conserved Targets in ESKAPEE Pathogens.

Rajput A, Seif Y, Choudhary KS, Dalldorf C, Poudel S, Monk JM, Palsson BO. Rajput A, et al. Among authors: seif y. mSystems. 2021 Jan 26;6(1):e00981-20. doi: 10.1128/mSystems.00981-20. mSystems. 2021. PMID: 33500331 Free PMC article.

8

Identifying the effect of vancomycin on health care-associated methicillin-resistant Staphylococcus aureus strains using bacteriological and physiological media.

Rajput A, Poudel S, Tsunemoto H, Meehan M, Szubin R, Olson CA, Seif Y, Lamsa A, Dillon N, Vrbanac A, Sugie J, Dahesh S, Monk JM, Dorrestein PC, Knight R, Pogliano J, Nizet V, Feist AM, Palsson BO. Rajput A, et al. Among authors: seif y. Gigascience. 2021 Jan 9;10(1):giaa156. doi: 10.1093/gigascience/giaa156. Gigascience. 2021. PMID: 33420779 Free PMC article.

9

A workflow for generating multi-strain genome-scale metabolic models of prokaryotes.

Norsigian CJ, Fang X, Seif Y, Monk JM, Palsson BO. Norsigian CJ, et al. Among authors: seif y. Nat Protoc. 2020 Jan;15(1):1-14. doi: 10.1038/s41596-019-0254-3. Epub 2019 Dec 20. Nat Protoc. 2020. PMID: 31863076 Free PMC article.

10

Pan-Genome Analysis of Transcriptional Regulation in Six Salmonella enterica Serovar Typhimurium Strains Reveals Their Different Regulatory Structures.

Yuan Y, Seif Y, Rychel K, Yoo R, Chauhan S, Poudel S, Al-Bulushi T, Palsson BO, Sastry AV. Yuan Y, et al. Among authors: seif y. mSystems. 2022 Dec 20;7(6):e0046722. doi: 10.1128/msystems.00467-22. Epub 2022 Nov 1. mSystems. 2022. PMID: 36317888 Free PMC article.

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