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Year Number of Results
1996 1
2004 1
2005 3
2006 2
2007 3
2008 2
2009 2
2010 2
2020 2
2021 2
2022 1
2023 9
2025 0

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27 results

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Page 1
QIIME allows analysis of high-throughput community sequencing data.
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Peña AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R. Caporaso JG, et al. Among authors: sevinsky jr. Nat Methods. 2010 May;7(5):335-6. doi: 10.1038/nmeth.f.303. Epub 2010 Apr 11. Nat Methods. 2010. PMID: 20383131 Free PMC article. No abstract available.
Accelerating bioinformatics implementation in public health.
Libuit KG, Doughty EL, Otieno JR, Ambrosio F, Kapsak CJ, Smith EA, Wright SM, Scribner MR, Petit Iii RA, Mendes CI, Huergo M, Legacki G, Loreth C, Park DJ, Sevinsky JR. Libuit KG, et al. Among authors: sevinsky jr. Microb Genom. 2023 Jul;9(7):mgen001051. doi: 10.1099/mgen.0.001051. Microb Genom. 2023. PMID: 37428142 Free PMC article.
Development of an amplicon-based sequencing approach in response to the global emergence of mpox.
Chen NFG, Chaguza C, Gagne L, Doucette M, Smole S, Buzby E, Hall J, Ash S, Harrington R, Cofsky S, Clancy S, Kapsak CJ, Sevinsky J, Libuit K, Park DJ, Hemarajata P, Garrigues JM, Green NM, Sierra-Patev S, Carpenter-Azevedo K, Huard RC, Pearson C, Incekara K, Nishimura C, Huang JP, Gagnon E, Reever E, Razeq J, Muyombwe A, Borges V, Ferreira R, Sobral D, Duarte S, Santos D, Vieira L, Gomes JP, Aquino C, Savino IM, Felton K, Bajwa M, Hayward N, Miller H, Naumann A, Allman R, Greer N, Fall A, Mostafa HH, McHugh MP, Maloney DM, Dewar R, Kenicer J, Parker A, Mathers K, Wild J, Cotton S, Templeton KE, Churchwell G, Lee PA, Pedrosa M, McGruder B, Schmedes S, Plumb MR, Wang X, Barcellos RB, Godinho FMS, Salvato RS, Ceniseros A, Breban MI, Grubaugh ND, Gallagher GR, Vogels CBF. Chen NFG, et al. Among authors: sevinsky j. PLoS Biol. 2023 Jun 13;21(6):e3002151. doi: 10.1371/journal.pbio.3002151. eCollection 2023 Jun. PLoS Biol. 2023. PMID: 37310918 Free PMC article.
TheiaEuk: a species-agnostic bioinformatics workflow for fungal genomic characterization.
Ambrosio FJ 3rd, Scribner MR, Wright SM, Otieno JR, Doughty EL, Gorzalski A, Siao DD, Killian S, Hua C, Schneider E, Tran M, Varghese V, Libuit KG, Pandori M, Sevinsky JR, Hess D. Ambrosio FJ 3rd, et al. Among authors: sevinsky jr. Front Public Health. 2023 Aug 1;11:1198213. doi: 10.3389/fpubh.2023.1198213. eCollection 2023. Front Public Health. 2023. PMID: 37593727 Free PMC article.
Implementation of California COVIDNet - a multi-sector collaboration for statewide SARS-CoV-2 genomic surveillance.
Wadford DA, Baumrind N, Baylis EF, Bell JM, Bouchard EL, Crumpler M, Foote EM, Gilliam S, Glaser CA, Hacker JK, Ledin K, Messenger SL, Morales C, Smith EA, Sevinsky JR, Corbett-Detig RB, DeRisi J, Jacobson K. Wadford DA, et al. Among authors: sevinsky jr. Front Public Health. 2023 Oct 23;11:1249614. doi: 10.3389/fpubh.2023.1249614. eCollection 2023. Front Public Health. 2023. PMID: 37937074 Free PMC article.
Rapid repeat infection of SARS-CoV-2 by two highly distinct delta-lineage viruses.
Gorzalski AJ, Boyles C, Sepcic V, Verma S, Sevinsky J, Libuit K, Van Hooser S, Pandori MW. Gorzalski AJ, et al. Among authors: sevinsky j. Diagn Microbiol Infect Dis. 2022 Sep;104(1):115747. doi: 10.1016/j.diagmicrobio.2022.115747. Epub 2022 Jun 22. Diagn Microbiol Infect Dis. 2022. PMID: 35843112 Free PMC article.
The use of whole-genome sequencing and development of bioinformatics to monitor overlapping outbreaks of Candida auris in southern Nevada.
Gorzalski A, Ambrosio FJ 3rd, Massic L, Scribner MR, Siao DD, Hua C, Dykema P, Schneider E, Njoku C, Libuit K, Sevinsky JR, Van Hooser S, Pandori M, Hess D. Gorzalski A, et al. Among authors: sevinsky jr. Front Public Health. 2023 Jul 13;11:1198189. doi: 10.3389/fpubh.2023.1198189. eCollection 2023. Front Public Health. 2023. PMID: 37522005 Free PMC article.
Genomic evidence for reinfection with SARS-CoV-2: a case study.
Tillett RL, Sevinsky JR, Hartley PD, Kerwin H, Crawford N, Gorzalski A, Laverdure C, Verma SC, Rossetto CC, Jackson D, Farrell MJ, Van Hooser S, Pandori M. Tillett RL, et al. Among authors: sevinsky jr. Lancet Infect Dis. 2021 Jan;21(1):52-58. doi: 10.1016/S1473-3099(20)30764-7. Epub 2020 Oct 12. Lancet Infect Dis. 2021. PMID: 33058797 Free PMC article.
GAMBIT (Genomic Approximation Method for Bacterial Identification and Tracking): A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.
Lumpe J, Gumbleton L, Gorzalski A, Libuit K, Varghese V, Lloyd T, Tadros F, Arsimendi T, Wagner E, Stephens C, Sevinsky J, Hess D, Pandori M. Lumpe J, et al. Among authors: sevinsky j. PLoS One. 2023 Feb 16;18(2):e0277575. doi: 10.1371/journal.pone.0277575. eCollection 2023. PLoS One. 2023. PMID: 36795668 Free PMC article.
27 results