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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
1962 1
1963 1
1964 1
1965 2
1966 1
1977 1
1997 1
1998 1
2000 1
2002 1
2003 1
2004 1
2005 2
2006 1
2007 2
2008 1
2009 2
2010 1
2011 1
2012 1
2013 2
2014 1
2015 2
2016 5
2017 4
2018 2
2019 2
2020 5
2021 6
2022 10
2023 2
2024 2

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66 results

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Page 1
Pan-cancer analyses reveal cancer-type-specific fungal ecologies and bacteriome interactions.
Narunsky-Haziza L, Sepich-Poore GD, Livyatan I, Asraf O, Martino C, Nejman D, Gavert N, Stajich JE, Amit G, González A, Wandro S, Perry G, Ariel R, Meltser A, Shaffer JP, Zhu Q, Balint-Lahat N, Barshack I, Dadiani M, Gal-Yam EN, Patel SP, Bashan A, Swafford AD, Pilpel Y, Knight R, Straussman R. Narunsky-Haziza L, et al. Among authors: shaffer jp. Cell. 2022 Sep 29;185(20):3789-3806.e17. doi: 10.1016/j.cell.2022.09.005. Cell. 2022. PMID: 36179670 Free PMC article.
Ultracold Rydberg molecules.
Shaffer JP, Rittenhouse ST, Sadeghpour HR. Shaffer JP, et al. Nat Commun. 2018 May 17;9(1):1965. doi: 10.1038/s41467-018-04135-6. Nat Commun. 2018. PMID: 29773795 Free PMC article. Review.
Bacterial Endosymbionts: Master Modulators of Fungal Phenotypes.
Araldi-Brondolo SJ, Spraker J, Shaffer JP, Woytenko EH, Baltrus DA, Gallery RE, Arnold AE. Araldi-Brondolo SJ, et al. Among authors: shaffer jp. Microbiol Spectr. 2017 Sep;5(5). doi: 10.1128/microbiolspec.FUNK-0056-2016. Microbiol Spectr. 2017. PMID: 28936944 Free article. Review.
Peripheral neuronal activation shapes the microbiome and alters gut physiology.
Griffiths JA, Yoo BB, Thuy-Boun P, Cantu VJ, Weldon KC, Challis C, Sweredoski MJ, Chan KY, Thron TM, Sharon G, Moradian A, Humphrey G, Zhu Q, Shaffer JP, Wolan DW, Dorrestein PC, Knight R, Gradinaru V, Mazmanian SK. Griffiths JA, et al. Among authors: shaffer jp. Cell Rep. 2024 Apr 23;43(4):113953. doi: 10.1016/j.celrep.2024.113953. Epub 2024 Mar 21. Cell Rep. 2024. PMID: 38517896 Free PMC article.
Standardized multi-omics of Earth's microbiomes reveals microbial and metabolite diversity.
Shaffer JP, Nothias LF, Thompson LR, Sanders JG, Salido RA, Couvillion SP, Brejnrod AD, Lejzerowicz F, Haiminen N, Huang S, Lutz HL, Zhu Q, Martino C, Morton JT, Karthikeyan S, Nothias-Esposito M, Dührkop K, Böcker S, Kim HW, Aksenov AA, Bittremieux W, Minich JJ, Marotz C, Bryant MM, Sanders K, Schwartz T, Humphrey G, Vásquez-Baeza Y, Tripathi A, Parida L, Carrieri AP, Beck KL, Das P, González A, McDonald D, Ladau J, Karst SM, Albertsen M, Ackermann G, DeReus J, Thomas T, Petras D, Shade A, Stegen J, Song SJ, Metz TO, Swafford AD, Dorrestein PC, Jansson JK, Gilbert JA, Knight R; Earth Microbiome Project 500 (EMP500) Consortium. Shaffer JP, et al. Nat Microbiol. 2022 Dec;7(12):2128-2150. doi: 10.1038/s41564-022-01266-x. Epub 2022 Nov 28. Nat Microbiol. 2022. PMID: 36443458 Free PMC article.
Enhancing untargeted metabolomics using metadata-based source annotation.
Gauglitz JM, West KA, Bittremieux W, Williams CL, Weldon KC, Panitchpakdi M, Di Ottavio F, Aceves CM, Brown E, Sikora NC, Jarmusch AK, Martino C, Tripathi A, Meehan MJ, Dorrestein K, Shaffer JP, Coras R, Vargas F, Goldasich LD, Schwartz T, Bryant M, Humphrey G, Johnson AJ, Spengler K, Belda-Ferre P, Diaz E, McDonald D, Zhu Q, Elijah EO, Wang M, Marotz C, Sprecher KE, Vargas-Robles D, Withrow D, Ackermann G, Herrera L, Bradford BJ, Marques LMM, Amaral JG, Silva RM, Veras FP, Cunha TM, Oliveira RDR, Louzada-Junior P, Mills RH, Piotrowski PK, Servetas SL, Da Silva SM, Jones CM, Lin NJ, Lippa KA, Jackson SA, Daouk RK, Galasko D, Dulai PS, Kalashnikova TI, Wittenberg C, Terkeltaub R, Doty MM, Kim JH, Rhee KE, Beauchamp-Walters J, Wright KP Jr, Dominguez-Bello MG, Manary M, Oliveira MF, Boland BS, Lopes NP, Guma M, Swafford AD, Dutton RJ, Knight R, Dorrestein PC. Gauglitz JM, et al. Among authors: shaffer jp. Nat Biotechnol. 2022 Dec;40(12):1774-1779. doi: 10.1038/s41587-022-01368-1. Epub 2022 Jul 7. Nat Biotechnol. 2022. PMID: 35798960 Free PMC article.
Interventions to improve adherence to lipid-lowering medication.
van Driel ML, Morledge MD, Ulep R, Shaffer JP, Davies P, Deichmann R. van Driel ML, et al. Among authors: shaffer jp. Cochrane Database Syst Rev. 2016 Dec 21;12(12):CD004371. doi: 10.1002/14651858.CD004371.pub4. Cochrane Database Syst Rev. 2016. PMID: 28000212 Free PMC article. Review.
Swapping Metagenomics Preprocessing Pipeline Components Offers Speed and Sensitivity Increases.
Armstrong G, Martino C, Morris J, Khaleghi B, Kang J, DeReus J, Zhu Q, Roush D, McDonald D, Gonazlez A, Shaffer JP, Carpenter C, Estaki M, Wandro S, Eilert S, Akel A, Eno J, Curewitz K, Swafford AD, Moshiri N, Rosing T, Knight R. Armstrong G, et al. Among authors: shaffer jp. mSystems. 2022 Apr 26;7(2):e0137821. doi: 10.1128/msystems.01378-21. Epub 2022 Mar 16. mSystems. 2022. PMID: 35293792 Free PMC article.
66 results