Shanahan HP[au] - Search Results

Year	Number of Results
1994	3
1995	2
2000	2
2003	1
2004	2
2005	2
2011	1
2012	1
2013	1
2014	2
2015	1
2017	1
2018	1
2022	0

1

The application of Hadoop in structural bioinformatics.

Alnasir JJ, Shanahan HP. Alnasir JJ, et al. Among authors: shanahan hp. Brief Bioinform. 2018 Nov 20. doi: 10.1093/bib/bby106. Online ahead of print. Brief Bioinform. 2018. PMID: 30462158

2

Bioinformatics on the cloud computing platform Azure.

Shanahan HP, Owen AM, Harrison AP. Shanahan HP, et al. PLoS One. 2014 Jul 22;9(7):e102642. doi: 10.1371/journal.pone.0102642. eCollection 2014. PLoS One. 2014. PMID: 25050811 Free PMC article.

3

A Novel Method to Detect Bias in Short Read NGS Data.

Alnasir J, Shanahan HP. Alnasir J, et al. Among authors: shanahan hp. J Integr Bioinform. 2017 Sep 23;14(3):20170025. doi: 10.1515/jib-2017-0025. J Integr Bioinform. 2017. PMID: 28941355 Free PMC article.

4

Dissecting the chromatin interactome of microRNA genes.

Chen D, Fu LY, Zhang Z, Li G, Zhang H, Jiang L, Harrison AP, Shanahan HP, Klukas C, Zhang HY, Ruan Y, Chen LL, Chen M. Chen D, et al. Among authors: shanahan hp. Nucleic Acids Res. 2014 Mar;42(5):3028-43. doi: 10.1093/nar/gkt1294. Epub 2013 Dec 18. Nucleic Acids Res. 2014. PMID: 24357409 Free PMC article.

5

Normalized Affymetrix expression data are biased by G-quadruplex formation.

Shanahan HP, Memon FN, Upton GJ, Harrison AP. Shanahan HP, et al. Nucleic Acids Res. 2012 Apr;40(8):3307-15. doi: 10.1093/nar/gkr1230. Epub 2011 Dec 22. Nucleic Acids Res. 2012. PMID: 22199258 Free PMC article.

6

Investigation into the annotation of protocol sequencing steps in the sequence read archive.

Alnasir J, Shanahan HP. Alnasir J, et al. Among authors: shanahan hp. Gigascience. 2015 May 9;4:23. doi: 10.1186/s13742-015-0064-7. eCollection 2015. Gigascience. 2015. PMID: 25960871 Free PMC article.

7

HTHquery: a method for detecting DNA-binding proteins with a helix-turn-helix structural motif.

Ferrer-Costa C, Shanahan HP, Jones S, Thornton JM. Ferrer-Costa C, et al. Among authors: shanahan hp. Bioinformatics. 2005 Sep 15;21(18):3679-80. doi: 10.1093/bioinformatics/bti575. Epub 2005 Jul 19. Bioinformatics. 2005. PMID: 16030074

8

Identifying DNA-binding proteins using structural motifs and the electrostatic potential.

Shanahan HP, Garcia MA, Jones S, Thornton JM. Shanahan HP, et al. Nucleic Acids Res. 2004 Sep 8;32(16):4732-41. doi: 10.1093/nar/gkh803. Print 2004. Nucleic Acids Res. 2004. PMID: 15356290 Free PMC article.

9

Using electrostatic potentials to predict DNA-binding sites on DNA-binding proteins.

Jones S, Shanahan HP, Berman HM, Thornton JM. Jones S, et al. Among authors: shanahan hp. Nucleic Acids Res. 2003 Dec 15;31(24):7189-98. doi: 10.1093/nar/gkg922. Nucleic Acids Res. 2003. PMID: 14654694 Free PMC article.

10

Amino acid architecture and the distribution of polar atoms on the surfaces of proteins.

Shanahan HP, Thornton JM. Shanahan HP, et al. Biopolymers. 2005 Aug 15;78(6):318-28. doi: 10.1002/bip.20295. Biopolymers. 2005. PMID: 15898105

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