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73 results

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Page 1
Biophysics at the dawn of exascale computers.
Singharoy A, Pérez A, Chipot C. Singharoy A, et al. Biophys J. 2023 Jul 25;122(14):E1-E2. doi: 10.1016/j.bpj.2023.06.017. Epub 2023 Jul 6. Biophys J. 2023. PMID: 37419113 Free PMC article. No abstract available.
Functional Organization of Glycolytic Metabolon on Mitochondria.
Wang H, Vant J, Wu Y, Sanchez R, Micou ML, Zhang A, Luczak V, Yu SB, Jabbo M, Yoon S, Abushawish AA, Ghassemian M, Griffis E, Hammarlund M, Singharoy A, Pekkurnaz G. Wang H, et al. Among authors: singharoy a. bioRxiv [Preprint]. 2023 Sep 8:2023.08.26.554955. doi: 10.1101/2023.08.26.554955. bioRxiv. 2023. PMID: 37662343 Free PMC article. Preprint.
Exploring cryo-electron microscopy with molecular dynamics.
Vant JW, Sarkar D, Nguyen J, Baker AT, Vermaas JV, Singharoy A. Vant JW, et al. Among authors: singharoy a. Biochem Soc Trans. 2022 Feb 28;50(1):569-581. doi: 10.1042/BST20210485. Biochem Soc Trans. 2022. PMID: 35212361 Review.
Organization of a functional glycolytic metabolon on mitochondria for metabolic efficiency.
Wang H, Vant JW, Zhang A, Sanchez RG, Wu Y, Micou ML, Luczak V, Whiddon Z, Carlson NM, Yu SB, Jabbo M, Yoon S, Abushawish AA, Ghassemian M, Masubuchi T, Gan Q, Watanabe S, Griffis ER, Hammarlund M, Singharoy A, Pekkurnaz G. Wang H, et al. Among authors: singharoy a. Nat Metab. 2024 Sep;6(9):1712-1735. doi: 10.1038/s42255-024-01121-9. Epub 2024 Sep 11. Nat Metab. 2024. PMID: 39261628
Structural mechanism of HP1α-dependent transcriptional repression and chromatin compaction.
Sokolova V, Miratsky J, Svetlov V, Brenowitz M, Vant J, Lewis T, Dryden K, Lee G, Sarkar S, Nudler E, Singharoy A, Tan D. Sokolova V, et al. Among authors: singharoy a. bioRxiv [Preprint]. 2023 Nov 30:2023.11.30.569387. doi: 10.1101/2023.11.30.569387. bioRxiv. 2023. Update in: Structure. 2024 Oct 3:S0969-2126(24)00382-4. doi: 10.1016/j.str.2024.09.013. PMID: 38076844 Free PMC article. Updated. Preprint.
Outcomes of the EMDataResource cryo-EM Ligand Modeling Challenge.
Lawson CL, Kryshtafovych A, Pintilie GD, Burley SK, Černý J, Chen VB, Emsley P, Gobbi A, Joachimiak A, Noreng S, Prisant MG, Read RJ, Richardson JS, Rohou AL, Schneider B, Sellers BD, Shao C, Sourial E, Williams CI, Williams CJ, Yang Y, Abbaraju V, Afonine PV, Baker ML, Bond PS, Blundell TL, Burnley T, Campbell A, Cao R, Cheng J, Chojnowski G, Cowtan KD, DiMaio F, Esmaeeli R, Giri N, Grubmüller H, Hoh SW, Hou J, Hryc CF, Hunte C, Igaev M, Joseph AP, Kao WC, Kihara D, Kumar D, Lang L, Lin S, Maddhuri Venkata Subramaniya SR, Mittal S, Mondal A, Moriarty NW, Muenks A, Murshudov GN, Nicholls RA, Olek M, Palmer CM, Perez A, Pohjolainen E, Pothula KR, Rowley CN, Sarkar D, Schäfer LU, Schlicksup CJ, Schröder GF, Shekhar M, Si D, Singharoy A, Sobolev OV, Terashi G, Vaiana AC, Vedithi SC, Verburgt J, Wang X, Warshamanage R, Winn MD, Weyand S, Yamashita K, Zhao M, Schmid MF, Berman HM, Chiu W. Lawson CL, et al. Among authors: singharoy a. Nat Methods. 2024 Jul;21(7):1340-1348. doi: 10.1038/s41592-024-02321-7. Epub 2024 Jun 25. Nat Methods. 2024. PMID: 38918604
Perspective on Integrative Simulations of Bioenergetic Domains.
Pirnia A, Maqdisi R, Mittal S, Sener M, Singharoy A. Pirnia A, et al. Among authors: singharoy a. J Phys Chem B. 2024 Apr 11;128(14):3302-3319. doi: 10.1021/acs.jpcb.3c07335. Epub 2024 Apr 2. J Phys Chem B. 2024. PMID: 38562105 Review.
Large-Scale Molecular Dynamics Simulations of Cellular Compartments.
Wilson E, Vant J, Layton J, Boyd R, Lee H, Turilli M, Hernández B, Wilkinson S, Jha S, Gupta C, Sarkar D, Singharoy A. Wilson E, et al. Among authors: singharoy a. Methods Mol Biol. 2021;2302:335-356. doi: 10.1007/978-1-0716-1394-8_18. Methods Mol Biol. 2021. PMID: 33877636
73 results