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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
1993 1
1995 1
1997 3
1998 6
1999 1
2000 3
2002 2
2003 2
2004 2
2005 4
2006 5
2007 3
2008 1
2010 3
2011 2
2012 2
2013 4
2014 4
2015 3
2016 5
2017 8
2018 6
2019 6
2020 10
2021 7
2022 7
2023 9
2024 6

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101 results

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Page 1
Pangenome Graphs.
Eizenga JM, Novak AM, Sibbesen JA, Heumos S, Ghaffaari A, Hickey G, Chang X, Seaman JD, Rounthwaite R, Ebler J, Rautiainen M, Garg S, Paten B, Marschall T, Sirén J, Garrison E. Eizenga JM, et al. Among authors: siren j. Annu Rev Genomics Hum Genet. 2020 Aug 31;21:139-162. doi: 10.1146/annurev-genom-120219-080406. Epub 2020 May 26. Annu Rev Genomics Hum Genet. 2020. PMID: 32453966 Free PMC article. Review.
A draft human pangenome reference.
Liao WW, Asri M, Ebler J, Doerr D, Haukness M, Hickey G, Lu S, Lucas JK, Monlong J, Abel HJ, Buonaiuto S, Chang XH, Cheng H, Chu J, Colonna V, Eizenga JM, Feng X, Fischer C, Fulton RS, Garg S, Groza C, Guarracino A, Harvey WT, Heumos S, Howe K, Jain M, Lu TY, Markello C, Martin FJ, Mitchell MW, Munson KM, Mwaniki MN, Novak AM, Olsen HE, Pesout T, Porubsky D, Prins P, Sibbesen JA, Sirén J, Tomlinson C, Villani F, Vollger MR, Antonacci-Fulton LL, Baid G, Baker CA, Belyaeva A, Billis K, Carroll A, Chang PC, Cody S, Cook DE, Cook-Deegan RM, Cornejo OE, Diekhans M, Ebert P, Fairley S, Fedrigo O, Felsenfeld AL, Formenti G, Frankish A, Gao Y, Garrison NA, Giron CG, Green RE, Haggerty L, Hoekzema K, Hourlier T, Ji HP, Kenny EE, Koenig BA, Kolesnikov A, Korbel JO, Kordosky J, Koren S, Lee H, Lewis AP, Magalhães H, Marco-Sola S, Marijon P, McCartney A, McDaniel J, Mountcastle J, Nattestad M, Nurk S, Olson ND, Popejoy AB, Puiu D, Rautiainen M, Regier AA, Rhie A, Sacco S, Sanders AD, Schneider VA, Schultz BI, Shafin K, Smith MW, Sofia HJ, Abou Tayoun AN, Thibaud-Nissen F, Tricomi FF, Wagner J, Walenz B, Wood JMD, Zimin AV, Bourque G, Chaisson MJP, Flicek P, Phillippy AM, Zook JM, Eichl… See abstract for full author list ➔ Liao WW, et al. Among authors: siren j. Nature. 2023 May;617(7960):312-324. doi: 10.1038/s41586-023-05896-x. Epub 2023 May 10. Nature. 2023. PMID: 37165242 Free PMC article.
Personalized Pangenome References.
Sirén J, Eskandar P, Ungaro MT, Hickey G, Eizenga JM, Novak AM, Chang X, Chang PC, Kolmogorov M, Carroll A, Monlong J, Paten B. Sirén J, et al. bioRxiv [Preprint]. 2023 Dec 15:2023.12.13.571553. doi: 10.1101/2023.12.13.571553. bioRxiv. 2023. PMID: 38168361 Free PMC article. Preprint.
Relative Suffix Trees.
Farruggia A, Gagie T, Navarro G, Puglisi SJ, Sirén J. Farruggia A, et al. Among authors: siren j. Comput J. 2018 May;61(5):773-788. doi: 10.1093/comjnl/bxx108. Epub 2017 Nov 21. Comput J. 2018. PMID: 29795706 Free PMC article.
Haplotype-aware graph indexes.
Sirén J, Garrison E, Novak AM, Paten B, Durbin R. Sirén J, et al. Bioinformatics. 2020 Jan 15;36(2):400-407. doi: 10.1093/bioinformatics/btz575. Bioinformatics. 2020. PMID: 31406990 Free PMC article.
GBZ file format for pangenome graphs.
Sirén J, Paten B. Sirén J, et al. Bioinformatics. 2022 Nov 15;38(22):5012-5018. doi: 10.1093/bioinformatics/btac656. Bioinformatics. 2022. PMID: 36179091 Free PMC article.
Vezf1 regulates cardiac structure and contractile function.
Paavola J, Alakoski T, Ulvila J, Kilpiö T, Sirén J, Perttunen S, Narumanchi S, Wang H, Lin R, Porvari K, Junttila J, Huikuri H, Immonen K, Lakkisto P, Magga J, Tikkanen I, Kerkelä R. Paavola J, et al. Among authors: siren j. EBioMedicine. 2020 Jan;51:102608. doi: 10.1016/j.ebiom.2019.102608. Epub 2020 Jan 3. EBioMedicine. 2020. PMID: 31911272 Free PMC article.
Distance indexing and seed clustering in sequence graphs.
Chang X, Eizenga J, Novak AM, Sirén J, Paten B. Chang X, et al. Among authors: siren j. Bioinformatics. 2020 Jul 1;36(Suppl_1):i146-i153. doi: 10.1093/bioinformatics/btaa446. Bioinformatics. 2020. PMID: 32657356 Free PMC article.
101 results