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Page 1
Enhlink infers distal and context-specific enhancer-promoter linkages.
Poirion OB, Zuo W, Spruce C, Daigle SL, Olson A, Skelly DA, Chesler EJ, Baker CL, White BS. Poirion OB, et al. Among authors: spruce c. bioRxiv. 2023 May 11:2023.05.11.540453. doi: 10.1101/2023.05.11.540453. Preprint. bioRxiv. 2023. PMID: 37214950 Free PMC article.
Tissue-Specific Trans Regulation of the Mouse Epigenome.
Baker CL, Walker M, Arat S, Ananda G, Petkova P, Powers NR, Tian H, Spruce C, Ji B, Rausch D, Choi K, Petkov PM, Carter GW, Paigen K. Baker CL, et al. Among authors: spruce c. Genetics. 2019 Mar;211(3):831-845. doi: 10.1534/genetics.118.301697. Epub 2018 Dec 28. Genetics. 2019. PMID: 30593494 Free PMC article.
Unique properties of a subset of human pluripotent stem cells with high capacity for self-renewal.
Lau KX, Mason EA, Kie J, De Souza DP, Kloehn J, Tull D, McConville MJ, Keniry A, Beck T, Blewitt ME, Ritchie ME, Naik SH, Zalcenstein D, Korn O, Su S, Romero IG, Spruce C, Baker CL, McGarr TC, Wells CA, Pera MF. Lau KX, et al. Among authors: spruce c. Nat Commun. 2020 May 15;11(1):2420. doi: 10.1038/s41467-020-16214-8. Nat Commun. 2020. PMID: 32415101 Free PMC article.
Variation in histone configurations correlates with gene expression across nine inbred strains of mice.
Tyler AL, Spruce C, Kursawe R, Haber A, Ball RL, Pitman WA, Fine AD, Raghupathy N, Walker M, Philip VM, Baker CL, Mahoney JM, Churchill GA, Trowbridge JJ, Stitzel ML, Paigen K, Petkov PM, Carter GW. Tyler AL, et al. Among authors: spruce c. Genome Res. 2023 May 22:gr.277467.122. doi: 10.1101/gr.277467.122. Online ahead of print. Genome Res. 2023. PMID: 37217254 Free article.
Mapping the Effects of Genetic Variation on Chromatin State and Gene Expression Reveals Loci That Control Ground State Pluripotency.
Skelly DA, Czechanski A, Byers C, Aydin S, Spruce C, Olivier C, Choi K, Gatti DM, Raghupathy N, Keele GR, Stanton A, Vincent M, Dion S, Greenstein I, Pankratz M, Porter DK, Martin W, O'Connor C, Qin W, Harrill AH, Choi T, Churchill GA, Munger SC, Baker CL, Reinholdt LG. Skelly DA, et al. Among authors: spruce c. Cell Stem Cell. 2020 Sep 3;27(3):459-469.e8. doi: 10.1016/j.stem.2020.07.005. Epub 2020 Aug 13. Cell Stem Cell. 2020. PMID: 32795400 Free PMC article.