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Page 1
Unbiased discovery of cancer pathways and therapeutics using Pathway Ensemble Tool and Benchmark.
Wang L, Pattnaik A, Sahoo SS, Stone EG, Zhuang Y, Benton A, Tajmul M, Chakravorty S, Dhawan D, Nguyen MA, Sirit I, Mundy K, Ricketts CJ, Hadisurya M, Baral G, Tinsley SL, Anderson NL, Hoda S, Briggs SD, Kaimakliotis HZ, Allen-Petersen BL, Tao WA, Linehan WM, Knapp DW, Hanna JA, Olson MR, Afzali B, Kazemian M. Wang L, et al. Among authors: chakravorty s. Nat Commun. 2024 Aug 24;15(1):7288. doi: 10.1038/s41467-024-51859-9. Nat Commun. 2024. PMID: 39179644 Free PMC article.
Granzyme A-producing T helper cells are critical for acute graft-versus-host disease.
Park S, Griesenauer B, Jiang H, Adom D, Mehrpouya-Bahrami P, Chakravorty S, Kazemian M, Imam T, Srivastava R, Hayes TA, Pardo J, Janga SC, Paczesny S, Kaplan MH, Olson MR. Park S, et al. Among authors: chakravorty s. JCI Insight. 2020 Sep 17;5(18):e124465. doi: 10.1172/jci.insight.124465. JCI Insight. 2020. PMID: 32809971 Free PMC article.
Host-virus chimeric events in SARS-CoV2 infected cells are infrequent and artifactual.
Yan B, Chakravorty S, Mirabelli C, Wang L, Trujillo-Ochoa JL, Chauss D, Kumar D, Lionakis MS, Olson MR, Wobus CE, Afzali B, Kazemian M. Yan B, et al. Among authors: chakravorty s. bioRxiv [Preprint]. 2021 Feb 17:2021.02.17.431704. doi: 10.1101/2021.02.17.431704. bioRxiv. 2021. Update in: J Virol. 2021 Jul 12;95(15):e0029421. doi: 10.1128/JVI.00294-21. PMID: 33619483 Free PMC article. Updated. Preprint.
A comprehensive single cell data analysis of lymphoblastoid cells reveals the role of super-enhancers in maintaining EBV latency.
Yan B, Wang C, Chakravorty S, Zhang Z, Kadadi SD, Zhuang Y, Sirit I, Hu Y, Jung M, Sahoo SS, Wang L, Shao K, Anderson NL, Trujillo-Ochoa JL, Briggs SD, Liu X, Olson MR, Afzali B, Zhao B, Kazemian M. Yan B, et al. Among authors: chakravorty s. J Med Virol. 2023 Jan;95(1):e28362. doi: 10.1002/jmv.28362. J Med Virol. 2023. PMID: 36453088 Free PMC article.