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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
1965 1
1978 1
2006 1
2007 1
2010 1
2011 1
2012 1
2013 2
2015 1
2016 2
2017 1
2019 2
2020 4
2021 7
2022 1
2023 2
2024 3

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28 results

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Page 1
OverProt: secondary structure consensus for protein families.
Midlik A, Hutařová Vařeková I, Hutař J, Chareshneu A, Berka K, Svobodová R. Midlik A, et al. Among authors: svobodova r. Bioinformatics. 2022 Jul 11;38(14):3648-3650. doi: 10.1093/bioinformatics/btac384. Bioinformatics. 2022. PMID: 35674374
CATH: increased structural coverage of functional space.
Sillitoe I, Bordin N, Dawson N, Waman VP, Ashford P, Scholes HM, Pang CSM, Woodridge L, Rauer C, Sen N, Abbasian M, Le Cornu S, Lam SD, Berka K, Varekova IH, Svobodova R, Lees J, Orengo CA. Sillitoe I, et al. Among authors: svobodova r. Nucleic Acids Res. 2021 Jan 8;49(D1):D266-D273. doi: 10.1093/nar/gkaa1079. Nucleic Acids Res. 2021. PMID: 33237325 Free PMC article.
Uncovering of cytochrome P450 anatomy by SecStrAnnotator.
Midlik A, Navrátilová V, Moturu TR, Koča J, Svobodová R, Berka K. Midlik A, et al. Among authors: svobodova r. Sci Rep. 2021 Jun 11;11(1):12345. doi: 10.1038/s41598-021-91494-8. Sci Rep. 2021. PMID: 34117311 Free PMC article.
2DProts: database of family-wide protein secondary structure diagrams.
Hutařová Vařeková I, Hutař J, Midlik A, Horský V, Hladká E, Svobodová R, Berka K. Hutařová Vařeková I, et al. Among authors: svobodova r. Bioinformatics. 2021 Dec 7;37(23):4599-4601. doi: 10.1093/bioinformatics/btab505. Bioinformatics. 2021. PMID: 34244700 Free PMC article.
Outcome of the First wwPDB/CCDC/D3R Ligand Validation Workshop.
Adams PD, Aertgeerts K, Bauer C, Bell JA, Berman HM, Bhat TN, Blaney JM, Bolton E, Bricogne G, Brown D, Burley SK, Case DA, Clark KL, Darden T, Emsley P, Feher VA, Feng Z, Groom CR, Harris SF, Hendle J, Holder T, Joachimiak A, Kleywegt GJ, Krojer T, Marcotrigiano J, Mark AE, Markley JL, Miller M, Minor W, Montelione GT, Murshudov G, Nakagawa A, Nakamura H, Nicholls A, Nicklaus M, Nolte RT, Padyana AK, Peishoff CE, Pieniazek S, Read RJ, Shao C, Sheriff S, Smart O, Soisson S, Spurlino J, Stouch T, Svobodova R, Tempel W, Terwilliger TC, Tronrud D, Velankar S, Ward SC, Warren GL, Westbrook JD, Williams P, Yang H, Young J. Adams PD, et al. Among authors: svobodova r. Structure. 2016 Apr 5;24(4):502-508. doi: 10.1016/j.str.2016.02.017. Structure. 2016. PMID: 27050687 Free PMC article.
AlphaFind: discover structure similarity across the proteome in AlphaFold DB.
Procházka D, Slanináková T, Olha J, Rošinec A, Grešová K, Jánošová M, Čillík J, Porubská J, Svobodová R, Dohnal V, Antol M. Procházka D, et al. Among authors: svobodova r. Nucleic Acids Res. 2024 Jul 5;52(W1):W182-W186. doi: 10.1093/nar/gkae397. Nucleic Acids Res. 2024. PMID: 38747341 Free PMC article.
28 results