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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2009 2
2010 4
2011 7
2012 6
2013 5
2014 3
2015 6
2016 5
2017 2
2018 1
2019 4
2020 2
2021 3
2022 0
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34 results
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Page 1
STRING v10: protein-protein interaction networks, integrated over the tree of life.
Szklarczyk D, Franceschini A, Wyder S, Forslund K, Heller D, Huerta-Cepas J, Simonovic M, Roth A, Santos A, Tsafou KP, Kuhn M, Bork P, Jensen LJ, von Mering C. Szklarczyk D, et al. Nucleic Acids Res. 2015 Jan;43(Database issue):D447-52. doi: 10.1093/nar/gku1003. Epub 2014 Oct 28. Nucleic Acids Res. 2015. PMID: 25352553 Free PMC article.
eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses.
Huerta-Cepas J, Szklarczyk D, Heller D, Hernández-Plaza A, Forslund SK, Cook H, Mende DR, Letunic I, Rattei T, Jensen LJ, von Mering C, Bork P. Huerta-Cepas J, et al. Among authors: szklarczyk d. Nucleic Acids Res. 2019 Jan 8;47(D1):D309-D314. doi: 10.1093/nar/gky1085. Nucleic Acids Res. 2019. PMID: 30418610 Free PMC article.
GUNC: detection of chimerism and contamination in prokaryotic genomes.
Orakov A, Fullam A, Coelho LP, Khedkar S, Szklarczyk D, Mende DR, Schmidt TSB, Bork P. Orakov A, et al. Among authors: szklarczyk d. Genome Biol. 2021 Jun 13;22(1):178. doi: 10.1186/s13059-021-02393-0. Genome Biol. 2021. PMID: 34120611 Free PMC article.
Protein-protein interaction databases.
Szklarczyk D, Jensen LJ. Szklarczyk D, et al. Methods Mol Biol. 2015;1278:39-56. doi: 10.1007/978-1-4939-2425-7_3. Methods Mol Biol. 2015. PMID: 25859942
Standardized benchmarking in the quest for orthologs.
Altenhoff AM, Boeckmann B, Capella-Gutierrez S, Dalquen DA, DeLuca T, Forslund K, Huerta-Cepas J, Linard B, Pereira C, Pryszcz LP, Schreiber F, da Silva AS, Szklarczyk D, Train CM, Bork P, Lecompte O, von Mering C, Xenarios I, Sjölander K, Jensen LJ, Martin MJ, Muffato M; Quest for Orthologs consortium, Gabaldón T, Lewis SE, Thomas PD, Sonnhammer E, Dessimoz C. Altenhoff AM, et al. Among authors: szklarczyk d. Nat Methods. 2016 May;13(5):425-30. doi: 10.1038/nmeth.3830. Epub 2016 Apr 4. Nat Methods. 2016. PMID: 27043882 Free PMC article.
The Quest for Orthologs benchmark service and consensus calls in 2020.
Altenhoff AM, Garrayo-Ventas J, Cosentino S, Emms D, Glover NM, Hernández-Plaza A, Nevers Y, Sundesha V, Szklarczyk D, Fernández JM, Codó L, For Orthologs Consortium TQ, Gelpi JL, Huerta-Cepas J, Iwasaki W, Kelly S, Lecompte O, Muffato M, Martin MJ, Capella-Gutierrez S, Thomas PD, Sonnhammer E, Dessimoz C. Altenhoff AM, et al. Among authors: szklarczyk d. Nucleic Acids Res. 2020 Jul 2;48(W1):W538-W545. doi: 10.1093/nar/gkaa308. Nucleic Acids Res. 2020. PMID: 32374845 Free PMC article.
34 results