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Year Number of Results
2010 1
2011 1
2012 3
2014 2
2015 2
2016 1
2017 2
2018 2
2020 2
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16 results
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A new paradigm for the scientific enterprise: nurturing the ecosystem.
Lancaster AK, Thessen AE, Virapongse A. Lancaster AK, et al. Among authors: thessen ae. F1000Res. 2018 Jun 20;7:803. doi: 10.12688/f1000research.15078.1. eCollection 2018. F1000Res. 2018. PMID: 30345023 Free PMC article.
Modifier Ontologies for frequency, certainty, degree, and coverage phenotype modifier.
Endara L, Thessen AE, Cole HA, Walls R, Gkoutos G, Cao Y, Chong SS, Cui H. Endara L, et al. Among authors: thessen ae. Biodivers Data J. 2018 Nov 28;(6):e29232. doi: 10.3897/BDJ.6.e29232. eCollection 2018. Biodivers Data J. 2018. PMID: 30532623 Free PMC article.
The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species.
Shefchek KA, Harris NL, Gargano M, Matentzoglu N, Unni D, Brush M, Keith D, Conlin T, Vasilevsky N, Zhang XA, Balhoff JP, Babb L, Bello SM, Blau H, Bradford Y, Carbon S, Carmody L, Chan LE, Cipriani V, Cuzick A, Della Rocca M, Dunn N, Essaid S, Fey P, Grove C, Gourdine JP, Hamosh A, Harris M, Helbig I, Hoatlin M, Joachimiak M, Jupp S, Lett KB, Lewis SE, McNamara C, Pendlington ZM, Pilgrim C, Putman T, Ravanmehr V, Reese J, Riggs E, Robb S, Roncaglia P, Seager J, Segerdell E, Similuk M, Storm AL, Thaxon C, Thessen A, Jacobsen JOB, McMurry JA, Groza T, Köhler S, Smedley D, Robinson PN, Mungall CJ, Haendel MA, Munoz-Torres MC, Osumi-Sutherland D. Shefchek KA, et al. Among authors: thessen a. Nucleic Acids Res. 2020 Jan 8;48(D1):D704-D715. doi: 10.1093/nar/gkz997. Nucleic Acids Res. 2020. PMID: 31701156 Free PMC article.
Finding our way through phenotypes.
Deans AR, Lewis SE, Huala E, Anzaldo SS, Ashburner M, Balhoff JP, Blackburn DC, Blake JA, Burleigh JG, Chanet B, Cooper LD, Courtot M, Csösz S, Cui H, Dahdul W, Das S, Dececchi TA, Dettai A, Diogo R, Druzinsky RE, Dumontier M, Franz NM, Friedrich F, Gkoutos GV, Haendel M, Harmon LJ, Hayamizu TF, He Y, Hines HM, Ibrahim N, Jackson LM, Jaiswal P, James-Zorn C, Köhler S, Lecointre G, Lapp H, Lawrence CJ, Le Novère N, Lundberg JG, Macklin J, Mast AR, Midford PE, Mikó I, Mungall CJ, Oellrich A, Osumi-Sutherland D, Parkinson H, Ramírez MJ, Richter S, Robinson PN, Ruttenberg A, Schulz KS, Segerdell E, Seltmann KC, Sharkey MJ, Smith AD, Smith B, Specht CD, Squires RB, Thacker RW, Thessen A, Fernandez-Triana J, Vihinen M, Vize PD, Vogt L, Wall CE, Walls RL, Westerfeld M, Wharton RA, Wirkner CS, Woolley JB, Yoder MJ, Zorn AM, Mabee P. Deans AR, et al. Among authors: thessen a. PLoS Biol. 2015 Jan 6;13(1):e1002033. doi: 10.1371/journal.pbio.1002033. eCollection 2015 Jan. PLoS Biol. 2015. PMID: 25562316 Free PMC article.
Emerging semantics to link phenotype and environment.
Thessen AE, Bunker DE, Buttigieg PL, Cooper LD, Dahdul WM, Domisch S, Franz NM, Jaiswal P, Lawrence-Dill CJ, Midford PE, Mungall CJ, Ramírez MJ, Specht CD, Vogt L, Vos RA, Walls RL, White JW, Zhang G, Deans AR, Huala E, Lewis SE, Mabee PM. Thessen AE, et al. PeerJ. 2015 Dec 14;3:e1470. doi: 10.7717/peerj.1470. eCollection 2015. PeerJ. 2015. PMID: 26713234 Free PMC article.
Synthesizer: Expediting synthesis studies from context-free data with information retrieval techniques.
Gandy LM, Gumm J, Fertig B, Thessen A, Kennish MJ, Chavan S, Marchionni L, Xia X, Shankrit S, Fertig EJ. Gandy LM, et al. Among authors: thessen a. PLoS One. 2017 Apr 24;12(4):e0175860. doi: 10.1371/journal.pone.0175860. eCollection 2017. PLoS One. 2017. PMID: 28437440 Free PMC article.
Applications of natural language processing in biodiversity science.
Thessen AE, Cui H, Mozzherin D. Thessen AE, et al. Adv Bioinformatics. 2012;2012:391574. doi: 10.1155/2012/391574. Epub 2012 May 22. Adv Bioinformatics. 2012. PMID: 22685456 Free PMC article.
Challenges with using names to link digital biodiversity information.
Patterson D, Mozzherin D, Shorthouse DP, Thessen A. Patterson D, et al. Among authors: thessen a. Biodivers Data J. 2016 May 25;(4):e8080. doi: 10.3897/BDJ.4.e8080. eCollection 2016. Biodivers Data J. 2016. PMID: 27346955 Free PMC article. No abstract available.
A novel curation system to facilitate data integration across regional citizen science survey programs.
Campbell DL, Thessen AE, Ries L. Campbell DL, et al. Among authors: thessen ae. PeerJ. 2020 Jul 29;8:e9219. doi: 10.7717/peerj.9219. eCollection 2020. PeerJ. 2020. PMID: 32821528 Free PMC article.
Calculating in situ degradation rates of hydrocarbon compounds in deep waters of the Gulf of Mexico.
Thessen AE, North EW. Thessen AE, et al. Mar Pollut Bull. 2017 Sep 15;122(1-2):77-84. doi: 10.1016/j.marpolbul.2017.06.004. Epub 2017 Jun 20. Mar Pollut Bull. 2017. PMID: 28645762
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