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prewas: data pre-processing for more informative bacterial GWAS.
Saund K, Lapp Z, Thiede SN, Pirani A, Snitkin ES. Saund K, et al. Among authors: thiede sn. Microb Genom. 2020 May;6(5):e000368. doi: 10.1099/mgen.0.000368. Epub 2020 Apr 20. Microb Genom. 2020. PMID: 32310745 Free PMC article.
Genomic Epidemiology of MRSA During Incarceration at a Large Inner-City Jail.
Popovich KJ, Thiede SN, Zawitz C, Aroutcheva A, Payne D, Janda W, Schoeny M, Green SJ, Snitkin ES, Weinstein RA. Popovich KJ, et al. Among authors: thiede sn. Clin Infect Dis. 2021 Dec 6;73(11):e3708-e3717. doi: 10.1093/cid/ciaa1937. Clin Infect Dis. 2021. PMID: 33395473 Free PMC article.
Teaching Python for Data Science: Collaborative development of a modular & interactive curriculum.
Duda M, Sovacool KL, Farzaneh N, Nguyen VK, Haynes SE, Falk H, Furman KL, Walker LA, Diao R, Oneka M, Drotos AC, Woloshin A, Dotson GA, Kriebel A, Meng L, Thiede SN, Lapp Z, Wolford BN. Duda M, et al. Among authors: thiede sn. J Open Source Educ. 2021;4(46):138. doi: 10.21105/jose.00138. Epub 2021 Dec 17. J Open Source Educ. 2021. PMID: 35187422 Free PMC article.
Genomic Update of Phenotypic Prediction Rule for Methicillin-Resistant Staphylococcus aureus (MRSA) USA300 Discloses Jail Transmission Networks with Increased Resistance.
Sansom SE, Benedict E, Thiede SN, Hota B, Aroutcheva A, Payne D, Zawitz C, Snitkin ES, Green SJ, Weinstein RA, Popovich KJ. Sansom SE, et al. Among authors: thiede sn. Microbiol Spectr. 2021 Sep 3;9(1):e0037621. doi: 10.1128/Spectrum.00376-21. Epub 2021 Jul 21. Microbiol Spectr. 2021. PMID: 34287060 Free PMC article.