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Evidence of directional and stabilizing selection in contemporary humans.

Sanjak JS, Sidorenko J, Robinson MR, Thornton KR, Visscher PM. Sanjak JS, et al. Among authors: thornton kr. Proc Natl Acad Sci U S A. 2018 Jan 2;115(1):151-156. doi: 10.1073/pnas.1707227114. Epub 2017 Dec 18. Proc Natl Acad Sci U S A. 2018. PMID: 29255044 Free PMC article.

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Efficient pedigree recording for fast population genetics simulation.

Kelleher J, Thornton KR, Ashander J, Ralph PL. Kelleher J, et al. Among authors: thornton kr. PLoS Comput Biol. 2018 Nov 1;14(11):e1006581. doi: 10.1371/journal.pcbi.1006581. eCollection 2018 Nov. PLoS Comput Biol. 2018. PMID: 30383757 Free PMC article.

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Progress and prospects in mapping recent selection in the genome.

Thornton KR, Jensen JD, Becquet C, Andolfatto P. Thornton KR, et al. Heredity (Edinb). 2007 Jun;98(6):340-8. doi: 10.1038/sj.hdy.6800967. Epub 2007 May 2. Heredity (Edinb). 2007. PMID: 17473869 Review.

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The Drosophila melanogaster Genetic Reference Panel.

Mackay TF, Richards S, Stone EA, Barbadilla A, Ayroles JF, Zhu D, Casillas S, Han Y, Magwire MM, Cridland JM, Richardson MF, Anholt RR, Barrón M, Bess C, Blankenburg KP, Carbone MA, Castellano D, Chaboub L, Duncan L, Harris Z, Javaid M, Jayaseelan JC, Jhangiani SN, Jordan KW, Lara F, Lawrence F, Lee SL, Librado P, Linheiro RS, Lyman RF, Mackey AJ, Munidasa M, Muzny DM, Nazareth L, Newsham I, Perales L, Pu LL, Qu C, Ràmia M, Reid JG, Rollmann SM, Rozas J, Saada N, Turlapati L, Worley KC, Wu YQ, Yamamoto A, Zhu Y, Bergman CM, Thornton KR, Mittelman D, Gibbs RA. Mackay TF, et al. Among authors: thornton kr. Nature. 2012 Feb 8;482(7384):173-8. doi: 10.1038/nature10811. Nature. 2012. PMID: 22318601 Free PMC article.

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Tandem duplications lead to novel expression patterns through exon shuffling in Drosophila yakuba.

Rogers RL, Shao L, Thornton KR. Rogers RL, et al. Among authors: thornton kr. PLoS Genet. 2017 May 22;13(5):e1006795. doi: 10.1371/journal.pgen.1006795. eCollection 2017 May. PLoS Genet. 2017. PMID: 28531189 Free PMC article.

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Polygenic Adaptation to an Environmental Shift: Temporal Dynamics of Variation Under Gaussian Stabilizing Selection and Additive Effects on a Single Trait.

Thornton KR. Thornton KR. Genetics. 2019 Dec;213(4):1513-1530. doi: 10.1534/genetics.119.302662. Epub 2019 Oct 25. Genetics. 2019. PMID: 31653678 Free PMC article.

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Efficient Software for Multi-marker, Region-Based Analysis of GWAS Data.

Sanjak JS, Long AD, Thornton KR. Sanjak JS, et al. Among authors: thornton kr. G3 (Bethesda). 2016 Apr 7;6(4):1023-30. doi: 10.1534/g3.115.026013. G3 (Bethesda). 2016. PMID: 26865700 Free PMC article.

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A Model of Compound Heterozygous, Loss-of-Function Alleles Is Broadly Consistent with Observations from Complex-Disease GWAS Datasets.

Sanjak JS, Long AD, Thornton KR. Sanjak JS, et al. Among authors: thornton kr. PLoS Genet. 2017 Jan 19;13(1):e1006573. doi: 10.1371/journal.pgen.1006573. eCollection 2017 Jan. PLoS Genet. 2017. PMID: 28103232 Free PMC article.

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Revised annotations, sex-biased expression, and lineage-specific genes in the Drosophila melanogaster group.

Rogers RL, Shao L, Sanjak JS, Andolfatto P, Thornton KR. Rogers RL, et al. Among authors: thornton kr. G3 (Bethesda). 2014 Oct 1;4(12):2345-51. doi: 10.1534/g3.114.013532. G3 (Bethesda). 2014. PMID: 25273863 Free PMC article.

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Genome sequencing reveals complex speciation in the Drosophila simulans clade.

Garrigan D, Kingan SB, Geneva AJ, Andolfatto P, Clark AG, Thornton KR, Presgraves DC. Garrigan D, et al. Among authors: thornton kr. Genome Res. 2012 Aug;22(8):1499-511. doi: 10.1101/gr.130922.111. Epub 2012 Apr 13. Genome Res. 2012. PMID: 22534282 Free PMC article.

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