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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2008 3
2009 1
2010 3
2011 1
2012 1
2014 1
2015 3
2016 5
2017 4
2018 2
2019 4
2020 3
2021 5
2022 3
2023 1

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33 results

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Page 1
SignalP 5.0 improves signal peptide predictions using deep neural networks.
Almagro Armenteros JJ, Tsirigos KD, Sønderby CK, Petersen TN, Winther O, Brunak S, von Heijne G, Nielsen H. Almagro Armenteros JJ, et al. Among authors: tsirigos kd. Nat Biotechnol. 2019 Apr;37(4):420-423. doi: 10.1038/s41587-019-0036-z. Epub 2019 Feb 18. Nat Biotechnol. 2019. PMID: 30778233
A Brief History of Protein Sorting Prediction.
Nielsen H, Tsirigos KD, Brunak S, von Heijne G. Nielsen H, et al. Among authors: tsirigos kd. Protein J. 2019 Jun;38(3):200-216. doi: 10.1007/s10930-019-09838-3. Protein J. 2019. PMID: 31119599 Free PMC article. Review.
Landscape of Eukaryotic Transmembrane Beta Barrel Proteins.
Roumia AF, Theodoropoulou MC, Tsirigos KD, Nielsen H, Bagos PG. Roumia AF, et al. Among authors: tsirigos kd. J Proteome Res. 2020 Mar 6;19(3):1209-1221. doi: 10.1021/acs.jproteome.9b00740. Epub 2020 Feb 11. J Proteome Res. 2020. PMID: 32008325
The next-generation Open Targets Platform: reimagined, redesigned, rebuilt.
Ochoa D, Hercules A, Carmona M, Suveges D, Baker J, Malangone C, Lopez I, Miranda A, Cruz-Castillo C, Fumis L, Bernal-Llinares M, Tsukanov K, Cornu H, Tsirigos K, Razuvayevskaya O, Buniello A, Schwartzentruber J, Karim M, Ariano B, Martinez Osorio RE, Ferrer J, Ge X, Machlitt-Northen S, Gonzalez-Uriarte A, Saha S, Tirunagari S, Mehta C, Roldán-Romero JM, Horswell S, Young S, Ghoussaini M, Hulcoop DG, Dunham I, McDonagh EM. Ochoa D, et al. Among authors: tsirigos k. Nucleic Acids Res. 2023 Jan 6;51(D1):D1353-D1359. doi: 10.1093/nar/gkac1046. Nucleic Acids Res. 2023. PMID: 36399499 Free PMC article.
Hidden neural networks for transmembrane protein topology prediction.
Tamposis IA, Sarantopoulou D, Theodoropoulou MC, Stasi EA, Kontou PI, Tsirigos KD, Bagos PG. Tamposis IA, et al. Among authors: tsirigos kd. Comput Struct Biotechnol J. 2021 Nov 8;19:6090-6097. doi: 10.1016/j.csbj.2021.11.006. eCollection 2021. Comput Struct Biotechnol J. 2021. PMID: 34849210 Free PMC article.
OMPdb: A Global Hub of Beta-Barrel Outer Membrane Proteins.
Roumia AF, Tsirigos KD, Theodoropoulou MC, Tamposis IA, Hamodrakas SJ, Bagos PG. Roumia AF, et al. Among authors: tsirigos kd. Front Bioinform. 2021 Apr 9;1:646581. doi: 10.3389/fbinf.2021.646581. eCollection 2021. Front Bioinform. 2021. PMID: 36303794 Free PMC article.
Genome-Wide Association Analysis of Pancreatic Beta-Cell Glucose Sensitivity.
Deshmukh HA, Madsen AL, Viñuela A, Have CT, Grarup N, Tura A, Mahajan A, Heggie AJ, Koivula RW, De Masi F, Tsirigos KK, Linneberg A, Drivsholm T, Pedersen O, Sørensen TIA, Astrup A, Gjesing AAP, Pavo I, Wood AR, Ruetten H, Jones AG, Koopman ADM, Cederberg H, Rutters F, Ridderstrale M, Laakso M, McCarthy MI, Frayling TM, Ferrannini E, Franks PW, Pearson ER, Mari A, Hansen T, Walker M. Deshmukh HA, et al. Among authors: tsirigos kk. J Clin Endocrinol Metab. 2021 Jan 1;106(1):80-90. doi: 10.1210/clinem/dgaa653. J Clin Endocrinol Metab. 2021. PMID: 32944759 Free PMC article.
DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation.
Quaglia F, Mészáros B, Salladini E, Hatos A, Pancsa R, Chemes LB, Pajkos M, Lazar T, Peña-Díaz S, Santos J, Ács V, Farahi N, Fichó E, Aspromonte MC, Bassot C, Chasapi A, Davey NE, Davidović R, Dobson L, Elofsson A, Erdős G, Gaudet P, Giglio M, Glavina J, Iserte J, Iglesias V, Kálmán Z, Lambrughi M, Leonardi E, Longhi S, Macedo-Ribeiro S, Maiani E, Marchetti J, Marino-Buslje C, Mészáros A, Monzon AM, Minervini G, Nadendla S, Nilsson JF, Novotný M, Ouzounis CA, Palopoli N, Papaleo E, Pereira PJB, Pozzati G, Promponas VJ, Pujols J, Rocha ACS, Salas M, Sawicki LR, Schad E, Shenoy A, Szaniszló T, Tsirigos KD, Veljkovic N, Parisi G, Ventura S, Dosztányi Z, Tompa P, Tosatto SCE, Piovesan D. Quaglia F, et al. Among authors: tsirigos kd. Nucleic Acids Res. 2022 Jan 7;50(D1):D480-D487. doi: 10.1093/nar/gkab1082. Nucleic Acids Res. 2022. PMID: 34850135 Free PMC article.
SignalP 6.0 predicts all five types of signal peptides using protein language models.
Teufel F, Almagro Armenteros JJ, Johansen AR, Gíslason MH, Pihl SI, Tsirigos KD, Winther O, Brunak S, von Heijne G, Nielsen H. Teufel F, et al. Among authors: tsirigos kd. Nat Biotechnol. 2022 Jul;40(7):1023-1025. doi: 10.1038/s41587-021-01156-3. Epub 2022 Jan 3. Nat Biotechnol. 2022. PMID: 34980915 Free PMC article.
33 results