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2020 2
2021 6
2022 1
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Page 1
CRISPR-CasΦ from huge phages is a hypercompact genome editor.
Pausch P, Al-Shayeb B, Bisom-Rapp E, Tsuchida CA, Li Z, Cress BF, Knott GJ, Jacobsen SE, Banfield JF, Doudna JA. Pausch P, et al. Among authors: tsuchida ca. Science. 2020 Jul 17;369(6501):333-337. doi: 10.1126/science.abb1400. Science. 2020. PMID: 32675376 Free PMC article.
DNA interference states of the hypercompact CRISPR-CasΦ effector.
Pausch P, Soczek KM, Herbst DA, Tsuchida CA, Al-Shayeb B, Banfield JF, Nogales E, Doudna JA. Pausch P, et al. Among authors: tsuchida ca. Nat Struct Mol Biol. 2021 Aug;28(8):652-661. doi: 10.1038/s41594-021-00632-3. Epub 2021 Aug 11. Nat Struct Mol Biol. 2021. PMID: 34381246 Free PMC article.
Chimeric CRISPR-CasX enzymes and guide RNAs for improved genome editing activity.
Tsuchida CA, Zhang S, Doost MS, Zhao Y, Wang J, O'Brien E, Fang H, Li CP, Li D, Hai ZY, Chuck J, Brötzmann J, Vartoumian A, Burstein D, Chen XW, Nogales E, Doudna JA, Liu JG. Tsuchida CA, et al. Mol Cell. 2022 Mar 17;82(6):1199-1209.e6. doi: 10.1016/j.molcel.2022.02.002. Epub 2022 Feb 25. Mol Cell. 2022. PMID: 35219382
Robotic RNA extraction for SARS-CoV-2 surveillance using saliva samples.
Hamilton JR, Stahl EC, Tsuchida CA, Lin-Shiao E, Tsui CK, Pestal K, Gildea HK, Witkowsky LB, Moehle EA, McDevitt SL, McElroy M, Keller A, Sylvain I, Hirsh A, Ciling A, Ehrenberg AJ, Ringeisen BR, Huberty G, Urnov FD, Giannikopoulos P, Doudna JA; IGI SARS-CoV-2 Consortium. Hamilton JR, et al. Among authors: tsuchida ca. PLoS One. 2021 Aug 5;16(8):e0255690. doi: 10.1371/journal.pone.0255690. eCollection 2021. PLoS One. 2021. PMID: 34351984 Free PMC article.
Robotic RNA extraction for SARS-CoV-2 surveillance using saliva samples.
Hamilton JR, Stahl EC, Tsuchida CA, Lin-Shiao E, Tsui CK, Pestal K, Gildea HK, Witkowsky LB, Moehle EA, McDevitt SL, McElroy M, Keller A, Sylvain I, Hirsh A, Ciling A, Ehrenberg AJ; IGI SARS-CoV-2 consortium, Ringeisen BR, Huberty G, Urnov FD, Giannikopoulos P, Doudna JA. Hamilton JR, et al. Among authors: tsuchida ca. medRxiv. 2021 Jan 29:2021.01.10.21249151. doi: 10.1101/2021.01.10.21249151. Preprint. medRxiv. 2021. PMID: 33532798 Free PMC article. Updated.
LuNER: Multiplexed SARS-CoV-2 detection in clinical swab and wastewater samples.
Stahl EC, Gopez AR, Tsuchida CA, Fan VB, Moehle EA, Witkowsky LB, Hamilton JR, Lin-Shiao E, McElroy M, McDevitt SL, Ciling A, Tsui CK, Pestal K, Gildea HK, Keller A, Sylvain IA, Williams C, Hirsh A, Ehrenberg AJ, Kantor R, Metzger M, Nelson KL, Urnov FD, Ringeisen BR, Giannikopoulos P, Doudna JA; IGI Testing Consortium. Stahl EC, et al. Among authors: tsuchida ca. PLoS One. 2021 Nov 10;16(11):e0258263. doi: 10.1371/journal.pone.0258263. eCollection 2021. PLoS One. 2021. PMID: 34758033 Free PMC article.
IGI-LuNER: single-well multiplexed RT-qPCR test for SARS-CoV-2.
Stahl EC, Tsuchida CA, Hamilton JR, Lin-Shiao E, McDevitt SL, Moehle EA, Witkowsky LB, Tsui CK, Pestal K, Gildea HK, McElroy M, Keller A, Sylvain I, Williams C, Hirsh A, Ciling A, Ehrenberg AJ, Urnov FD, Ringeisen BR, Giannikopoulos P, Doudna JA. Stahl EC, et al. Among authors: tsuchida ca. medRxiv. 2020 Dec 11:2020.12.10.20247338. doi: 10.1101/2020.12.10.20247338. Preprint. medRxiv. 2020. PMID: 33330883 Free PMC article.
Launching a saliva-based SARS-CoV-2 surveillance testing program on a university campus.
Ehrenberg AJ, Moehle EA, Brook CE, Doudna Cate AH, Witkowsky LB, Sachdeva R, Hirsh A, Barry K, Hamilton JR, Lin-Shiao E, McDevitt S, Valentin-Alvarado L, Letourneau KN, Hunter L, Keller A, Pestal K, Frankino PA, Murley A, Nandakumar D, Stahl EC, Tsuchida CA, Gildea HK, Murdock AG, Hochstrasser ML, O'Brien E, Ciling A, Tsitsiklis A, Worden K, Dugast-Darzacq C, Hays SG, Barber CC, McGarrigle R, Lam EK, Ensminger DC, Bardet L, Sherry C, Harte A, Nicolette G, Giannikopoulos P, Hockemeyer D, Petersen M, Urnov FD, Ringeisen BR, Boots M, Doudna JA; IGI SARS-CoV-2 Testing Consortium. Ehrenberg AJ, et al. Among authors: tsuchida ca. PLoS One. 2021 May 26;16(5):e0251296. doi: 10.1371/journal.pone.0251296. eCollection 2021. PLoS One. 2021. PMID: 34038425 Free PMC article.