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Global Run-on Sequencing (GRO-Seq).
Tzerpos P, Daniel B, Nagy L. Tzerpos P, et al. Methods Mol Biol. 2021;2351:25-39. doi: 10.1007/978-1-0716-1597-3_2. Methods Mol Biol. 2021. PMID: 34382182
The 3D enhancer network of the developing T cell genome is shaped by SATB1.
Zelenka T, Klonizakis A, Tsoukatou D, Papamatheakis DA, Franzenburg S, Tzerpos P, Tzonevrakis IR, Papadogkonas G, Kapsetaki M, Nikolaou C, Plewczynski D, Spilianakis C. Zelenka T, et al. Among authors: tzerpos p. Nat Commun. 2022 Nov 14;13(1):6954. doi: 10.1038/s41467-022-34345-y. Nat Commun. 2022. PMID: 36376298 Free PMC article.
A novel SATB1 protein isoform with different biophysical properties.
Zelenka T, Papamatheakis DA, Tzerpos P, Panagopoulos G, Tsolis KC, Papadakis VM, Mariatos Metaxas D, Papadogkonas G, Mores E, Kapsetaki M, Papamatheakis J, Stanek D, Spilianakis C. Zelenka T, et al. Among authors: tzerpos p. Front Cell Dev Biol. 2023 Aug 11;11:1242481. doi: 10.3389/fcell.2023.1242481. eCollection 2023. Front Cell Dev Biol. 2023. PMID: 37635874 Free PMC article.
The Nuclear Receptor PPARγ Controls Progressive Macrophage Polarization as a Ligand-Insensitive Epigenomic Ratchet of Transcriptional Memory.
Daniel B, Nagy G, Czimmerer Z, Horvath A, Hammers DW, Cuaranta-Monroy I, Poliska S, Tzerpos P, Kolostyak Z, Hays TT, Patsalos A, Houtman R, Sauer S, Francois-Deleuze J, Rastinejad F, Balint BL, Sweeney HL, Nagy L. Daniel B, et al. Among authors: tzerpos p. Immunity. 2018 Oct 16;49(4):615-626.e6. doi: 10.1016/j.immuni.2018.09.005. Immunity. 2018. PMID: 30332629 Free PMC article.
Retinoid X receptor suppresses a metastasis-promoting transcriptional program in myeloid cells via a ligand-insensitive mechanism.
Kiss M, Czimmerer Z, Nagy G, Bieniasz-Krzywiec P, Ehling M, Pap A, Poliska S, Boto P, Tzerpos P, Horvath A, Kolostyak Z, Daniel B, Szatmari I, Mazzone M, Nagy L. Kiss M, et al. Among authors: tzerpos p. Proc Natl Acad Sci U S A. 2017 Oct 3;114(40):10725-10730. doi: 10.1073/pnas.1700785114. Epub 2017 Sep 18. Proc Natl Acad Sci U S A. 2017. PMID: 28923935 Free PMC article.
The transcription factor EGR2 is the molecular linchpin connecting STAT6 activation to the late, stable epigenomic program of alternative macrophage polarization.
Daniel B, Czimmerer Z, Halasz L, Boto P, Kolostyak Z, Poliska S, Berger WK, Tzerpos P, Nagy G, Horvath A, Hajas G, Cseh T, Nagy A, Sauer S, Francois-Deleuze J, Szatmari I, Bacsi A, Nagy L. Daniel B, et al. Among authors: tzerpos p. Genes Dev. 2020 Nov 1;34(21-22):1474-1492. doi: 10.1101/gad.343038.120. Epub 2020 Oct 15. Genes Dev. 2020. PMID: 33060136 Free PMC article.