Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation

Search Page

Filters

My NCBI Filters

Results by year

Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2015 1
2016 1
2017 2
2018 1
2020 1
2022 2
2023 4
2024 4

Text availability

Article attribute

Article type

Publication date

Search Results

15 results

Results by year

Filters applied: . Clear all
Page 1
Geographic variation of mutagenic exposures in kidney cancer genomes.
Senkin S, Moody S, Díaz-Gay M, Abedi-Ardekani B, Cattiaux T, Ferreiro-Iglesias A, Wang J, Fitzgerald S, Kazachkova M, Vangara R, Le AP, Bergstrom EN, Khandekar A, Otlu B, Cheema S, Latimer C, Thomas E, Atkins JR, Smith-Byrne K, Cortez Cardoso Penha R, Carreira C, Chopard P, Gaborieau V, Keski-Rahkonen P, Jones D, Teague JW, Ferlicot S, Asgari M, Sangkhathat S, Attawettayanon W, Świątkowska B, Jarmalaite S, Sabaliauskaite R, Shibata T, Fukagawa A, Mates D, Jinga V, Rascu S, Mijuskovic M, Savic S, Milosavljevic S, Bartlett JMS, Albert M, Phouthavongsy L, Ashton-Prolla P, Botton MR, Silva Neto B, Bezerra SM, Curado MP, Zequi SC, Reis RM, Faria EF, de Menezes NS, Ferrari RS, Banks RE, Vasudev NS, Zaridze D, Mukeriya A, Shangina O, Matveev V, Foretova L, Navratilova M, Holcatova I, Hornakova A, Janout V, Purdue MP, Rothman N, Chanock SJ, Ueland PM, Johansson M, McKay J, Scelo G, Chanudet E, Humphreys L, de Carvalho AC, Perdomo S, Alexandrov LB, Stratton MR, Brennan P. Senkin S, et al. Among authors: vangara r. Nature. 2024 May;629(8013):910-918. doi: 10.1038/s41586-024-07368-2. Epub 2024 May 1. Nature. 2024. PMID: 38693263 Free PMC article.
Improved Protein Decoy Selection via Non-Negative Matrix Factorization.
Akhter N, Kabir KL, Chennupati G, Vangara R, Alexandrov BS, Djidjev H, Shehu A. Akhter N, et al. Among authors: vangara r. IEEE/ACM Trans Comput Biol Bioinform. 2022 May-Jun;19(3):1670-1682. doi: 10.1109/TCBB.2020.3049088. Epub 2022 Jun 3. IEEE/ACM Trans Comput Biol Bioinform. 2022. PMID: 33400654
Visualizing and exploring patterns of large mutational events with SigProfilerMatrixGenerator.
Khandekar A, Vangara R, Barnes M, Díaz-Gay M, Abbasi A, Bergstrom EN, Steele CD, Pillay N, Alexandrov LB. Khandekar A, et al. Among authors: vangara r. bioRxiv [Preprint]. 2023 Feb 4:2023.02.03.527015. doi: 10.1101/2023.02.03.527015. bioRxiv. 2023. Update in: BMC Genomics. 2023 Aug 21;24(1):469. doi: 10.1186/s12864-023-09584-y. PMID: 36778452 Free PMC article. Updated. Preprint.
APOBEC shapes tumor evolution and age at onset of lung cancer in smokers.
Zhang T, Sang J, Hoang PH, Zhao W, Rosenbaum J, Johnson KE, Klimczak LJ, McElderry J, Klein A, Wirth C, Bergstrom EN, Díaz-Gay M, Vangara R, Colon-Matos F, Hutchinson A, Lawrence SM, Cole N, Zhu B, Przytycka TM, Shi J, Caporaso NE, Homer R, Pesatori AC, Consonni D, Imielinski M, Chanock SJ, Wedge DC, Gordenin DA, Alexandrov LB, Harris RS, Landi MT. Zhang T, et al. Among authors: vangara r. bioRxiv [Preprint]. 2024 Apr 3:2024.04.02.587805. doi: 10.1101/2024.04.02.587805. bioRxiv. 2024. PMID: 38617360 Free PMC article. Preprint.
Uncovering novel mutational signatures by de novo extraction with SigProfilerExtractor.
Islam SMA, Díaz-Gay M, Wu Y, Barnes M, Vangara R, Bergstrom EN, He Y, Vella M, Wang J, Teague JW, Clapham P, Moody S, Senkin S, Li YR, Riva L, Zhang T, Gruber AJ, Steele CD, Otlu B, Khandekar A, Abbasi A, Humphreys L, Syulyukina N, Brady SW, Alexandrov BS, Pillay N, Zhang J, Adams DJ, Martincorena I, Wedge DC, Landi MT, Brennan P, Stratton MR, Rozen SG, Alexandrov LB. Islam SMA, et al. Among authors: vangara r. Cell Genom. 2022 Nov 9;2(11):None. doi: 10.1016/j.xgen.2022.100179. Cell Genom. 2022. PMID: 36388765 Free PMC article.
Preoperative embolisation of orbital solitary fibrous tumour.
Vijitha VS, Kapoor AG, Mittal R, Vangara R. Vijitha VS, et al. Among authors: vangara r. BMJ Case Rep. 2020 Dec 22;13(12):e235576. doi: 10.1136/bcr-2020-235576. BMJ Case Rep. 2020. PMID: 33370960 Free PMC article.
Assigning mutational signatures to individual samples and individual somatic mutations with SigProfilerAssignment.
Díaz-Gay M, Vangara R, Barnes M, Wang X, Islam SMA, Vermes I, Narasimman NB, Yang T, Jiang Z, Moody S, Senkin S, Brennan P, Stratton MR, Alexandrov LB. Díaz-Gay M, et al. Among authors: vangara r. bioRxiv [Preprint]. 2023 Jul 11:2023.07.10.548264. doi: 10.1101/2023.07.10.548264. bioRxiv. 2023. Update in: Bioinformatics. 2023 Dec 1;39(12):btad756. doi: 10.1093/bioinformatics/btad756. PMID: 37502962 Free PMC article. Updated. Preprint.
The Complexity of Tobacco Smoke-Induced Mutagenesis in Head and Neck Cancer.
Torrens L, Moody S, de Carvalho AC, Kazachkova M, Abedi-Ardekani B, Cheema S, Senkin S, Cattiaux T, Cortez Cardoso Penha R, Atkins JR, Gaborieau V, Chopard P, Carreira C, Abbasi A, Bergstrom EN, Vangara R, Wang J, Fitzgerald S, Latimer C, Diaz-Gay M, Jones D, Teague J, Ribeiro Pinto F, Kowalski LP, Polesel J, Giudici F, de Oliveira JC, Lagiou P, Lagiou A, Vilensky M, Mates D, Mates IN, Arantes LM, Reis R, Podesta JRV, von Zeidler SV, Holcatova I, Curado MP, Canova C, Fabianova E, Rodríguez-Urrego PA, Humphreys L, Alexandrov LB, Brennan P, Stratton MR, Perdomo S. Torrens L, et al. Among authors: vangara r. medRxiv [Preprint]. 2024 Apr 17:2024.04.15.24305006. doi: 10.1101/2024.04.15.24305006. medRxiv. 2024. PMID: 38699364 Free PMC article. Preprint.
15 results