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Page 1
Spatiotemporal, optogenetic control of gene expression in organoids.
Legnini I, Emmenegger L, Zappulo A, Rybak-Wolf A, Wurmus R, Martinez AO, Jara CC, Boltengagen A, Hessler T, Mastrobuoni G, Kempa S, Zinzen R, Woehler A, Rajewsky N. Legnini I, et al. Among authors: wurmus r. Nat Methods. 2023 Oct;20(10):1544-1552. doi: 10.1038/s41592-023-01986-w. Epub 2023 Sep 21. Nat Methods. 2023. PMID: 37735569 Free PMC article.
PiGx: reproducible genomics analysis pipelines with GNU Guix.
Wurmus R, Uyar B, Osberg B, Franke V, Gosdschan A, Wreczycka K, Ronen J, Akalin A. Wurmus R, et al. Gigascience. 2018 Dec 1;7(12):giy123. doi: 10.1093/gigascience/giy123. Gigascience. 2018. PMID: 30277498 Free PMC article.
Scalable Workflows and Reproducible Data Analysis for Genomics.
Strozzi F, Janssen R, Wurmus R, Crusoe MR, Githinji G, Di Tommaso P, Belhachemi D, Möller S, Smant G, de Ligt J, Prins P. Strozzi F, et al. Among authors: wurmus r. Methods Mol Biol. 2019;1910:723-745. doi: 10.1007/978-1-4939-9074-0_24. Methods Mol Biol. 2019. PMID: 31278683 Free PMC article.
SARS-CoV-2 infection dynamics revealed by wastewater sequencing analysis and deconvolution.
Schumann VF, de Castro Cuadrat RR, Wyler E, Wurmus R, Deter A, Quedenau C, Dohmen J, Faxel M, Borodina T, Blume A, Freimuth J, Meixner M, Grau JH, Liere K, Hackenbeck T, Zietzschmann F, Gnirss R, Böckelmann U, Uyar B, Franke V, Barke N, Altmüller J, Rajewsky N, Landthaler M, Akalin A. Schumann VF, et al. Among authors: wurmus r. Sci Total Environ. 2022 Dec 20;853:158931. doi: 10.1016/j.scitotenv.2022.158931. Epub 2022 Oct 10. Sci Total Environ. 2022. PMID: 36228784 Free PMC article.
HOT or not: examining the basis of high-occupancy target regions.
Wreczycka K, Franke V, Uyar B, Wurmus R, Bulut S, Tursun B, Akalin A. Wreczycka K, et al. Among authors: wurmus r. Nucleic Acids Res. 2019 Jun 20;47(11):5735-5745. doi: 10.1093/nar/gkz460. Nucleic Acids Res. 2019. PMID: 31114922 Free PMC article.