Xue LC[au] - Search Results

Year	Number of Results
2011	3
2013	1
2014	2
2015	2
2016	2
2017	4
2018	4
2019	3
2020	3
2021	1
2022	2
2023	2

1

Entropy and Variability: A Second Opinion by Deep Learning.

Rademaker DT, Xue LC, 't Hoen PAC, Vriend G. Rademaker DT, et al. Among authors: xue lc. Biomolecules. 2022 Nov 23;12(12):1740. doi: 10.3390/biom12121740. Biomolecules. 2022. PMID: 36551168 Free PMC article.

2

Computational prediction of protein interfaces: A review of data driven methods.

Xue LC, Dobbs D, Bonvin AM, Honavar V. Xue LC, et al. FEBS Lett. 2015 Nov 30;589(23):3516-26. doi: 10.1016/j.febslet.2015.10.003. Epub 2015 Oct 13. FEBS Lett. 2015. PMID: 26460190 Free PMC article. Review.

3

PANDORA: A Fast, Anchor-Restrained Modelling Protocol for Peptide: MHC Complexes.

Marzella DF, Parizi FM, van Tilborg D, Renaud N, Sybrandi D, Buzatu R, Rademaker DT, 't Hoen PAC, Xue LC. Marzella DF, et al. Among authors: xue lc. Front Immunol. 2022 May 10;13:878762. doi: 10.3389/fimmu.2022.878762. eCollection 2022. Front Immunol. 2022. PMID: 35619705 Free PMC article.

4

Machine learning competition in immunology - Prediction of HLA class I binding peptides.

Zhang GL, Ansari HR, Bradley P, Cawley GC, Hertz T, Hu X, Jojic N, Kim Y, Kohlbacher O, Lund O, Lundegaard C, Magaret CA, Nielsen M, Papadopoulos H, Raghava GP, Tal VS, Xue LC, Yanover C, Zhu S, Rock MT, Crowe JE, Panayiotou C, Polycarpou MM, Duch W, Brusic V. Zhang GL, et al. Among authors: xue lc. J Immunol Methods. 2011 Nov 30;374(1-2):1-4. doi: 10.1016/j.jim.2011.09.010. Epub 2011 Sep 29. J Immunol Methods. 2011. PMID: 21986107 No abstract available.

5

DeepRank: a deep learning framework for data mining 3D protein-protein interfaces.

Renaud N, Geng C, Georgievska S, Ambrosetti F, Ridder L, Marzella DF, Réau MF, Bonvin AMJJ, Xue LC. Renaud N, et al. Among authors: xue lc. Nat Commun. 2021 Dec 3;12(1):7068. doi: 10.1038/s41467-021-27396-0. Nat Commun. 2021. PMID: 34862392 Free PMC article.

6

An overview of data-driven HADDOCK strategies in CAPRI rounds 38-45.

Koukos PI, Roel-Touris J, Ambrosetti F, Geng C, Schaarschmidt J, Trellet ME, Melquiond ASJ, Xue LC, Honorato RV, Moreira I, Kurkcuoglu Z, Vangone A, Bonvin AMJJ. Koukos PI, et al. Among authors: xue lc. Proteins. 2020 Aug;88(8):1029-1036. doi: 10.1002/prot.25869. Epub 2020 Jan 7. Proteins. 2020. PMID: 31886559

7

Large-scale prediction of binding affinity in protein-small ligand complexes: the PRODIGY-LIG web server.

Vangone A, Schaarschmidt J, Koukos P, Geng C, Citro N, Trellet ME, Xue LC, Bonvin AMJJ. Vangone A, et al. Among authors: xue lc. Bioinformatics. 2019 May 1;35(9):1585-1587. doi: 10.1093/bioinformatics/bty816. Bioinformatics. 2019. PMID: 31051038

8

Template-based protein-protein docking exploiting pairwise interfacial residue restraints.

Xue LC, Rodrigues JPGLM, Dobbs D, Honavar V, Bonvin AMJJ. Xue LC, et al. Brief Bioinform. 2017 May 1;18(3):458-466. doi: 10.1093/bib/bbw027. Brief Bioinform. 2017. PMID: 27013645 Free PMC article.

9

iScore: a novel graph kernel-based function for scoring protein-protein docking models.

Geng C, Jung Y, Renaud N, Honavar V, Bonvin AMJJ, Xue LC. Geng C, et al. Among authors: xue lc. Bioinformatics. 2020 Jan 1;36(1):112-121. doi: 10.1093/bioinformatics/btz496. Bioinformatics. 2020. PMID: 31199455 Free PMC article.

10

Protein-ligand pose and affinity prediction: Lessons from D3R Grand Challenge 3.

Koukos PI, Xue LC, Bonvin AMJJ. Koukos PI, et al. Among authors: xue lc. J Comput Aided Mol Des. 2019 Jan;33(1):83-91. doi: 10.1007/s10822-018-0148-4. Epub 2018 Aug 20. J Comput Aided Mol Des. 2019. PMID: 30128928 Free PMC article.

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