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Helitrons shaping the genomic architecture of Drosophila: enrichment of DINE-TR1 in alpha- and beta-heterochromatin, satellite DNA emergence, and piRNA expression.
Dias GB, Heringer P, Svartman M, Kuhn GC. Dias GB, et al. Chromosome Res. 2015 Sep;23(3):597-613. doi: 10.1007/s10577-015-9480-x. Chromosome Res. 2015. PMID: 26408292 Review.
Drosophila INterspersed Elements (DINEs) constitute an abundant but poorly understood group of Helitrons present in several Drosophila species. ...By analyzing the genome of Drosophila virilis and Drosophila americana, we show that DINE-TR1 is highly a …
Drosophila INterspersed Elements (DINEs) constitute an abundant but poorly understood group of Helitrons present in several Drosop …
Helitrons in Drosophila: Chromatin modulation and tandem insertions.
Dias GB, Heringer P, Kuhn GC. Dias GB, et al. Mob Genet Elements. 2016 Mar 7;6(2):e1154638. doi: 10.1080/2159256X.2016.1154638. eCollection 2016 Mar-Apr. Mob Genet Elements. 2016. PMID: 27141326 Free PMC article.
We have recently characterized a group of Helitrons in Drosophila, named DINE-TR1, that display interesting features, including pronounced enrichment at beta-heterochromatin, multiple tandem insertions (TIs) of the entire TE, and that experienced at least 2 independent exp …
We have recently characterized a group of Helitrons in Drosophila, named DINE-TR1, that display interesting features, including prono …
Genome location, evolution and centromeric contribution of satellite DNAs shared between the two closely related species Drosophila serido and D. antonietae (repleta group, buzzatii cluster).
Laborne AM, Barrios-Leal DY, Heslop-Harrison JS, Manfrin MH, Kuhn GCS. Laborne AM, et al. Chromosoma. 2024 Dec 10;134(1):1. doi: 10.1007/s00412-024-00827-9. Chromosoma. 2024. PMID: 39656291
Here, we used Illumina paired-end sequencing raw data and graph-based read-clustering with the TAREAN bioinformatic tool to study the satDNAs in two cactophilic neotropical cryptic species of Drosophila from the buzzatii cluster (repleta group), D. serido and D. antonietae …
Here, we used Illumina paired-end sequencing raw data and graph-based read-clustering with the TAREAN bioinformatic tool to study the satDNA …
Structure, Organization, and Evolution of Satellite DNAs: Insights from the Drosophila repleta and D. virilis Species Groups.
Kuhn GCS, Heringer P, Dias GB. Kuhn GCS, et al. Prog Mol Subcell Biol. 2021;60:27-56. doi: 10.1007/978-3-030-74889-0_2. Prog Mol Subcell Biol. 2021. PMID: 34386871
Since the discovery of satDNAs more than 50 years ago, species from the Drosophila genus have continuously been used as models to study several aspects of satDNA biology. These studies have been largely concentrated in D. melanogaster and closely related species from the S …
Since the discovery of satDNAs more than 50 years ago, species from the Drosophila genus have continuously been used as models to stu …
Concurrent Duplication of Drosophila Cid and Cenp-C Genes Resulted in Accelerated Evolution and Male Germline-Biased Expression of the New Copies.
Teixeira JR, Dias GB, Svartman M, Ruiz A, Kuhn GCS. Teixeira JR, et al. J Mol Evol. 2018 Jul;86(6):353-364. doi: 10.1007/s00239-018-9851-y. Epub 2018 Jun 23. J Mol Evol. 2018. PMID: 29934734
Particularly interesting are the highly diverged Cid1 and Cid5 paralogs of the Drosophila subgenus, which are probably present in over one thousand species. Given that CenH3 and Cenp-C likely co-evolve as a functional unit, we investigated the molecular evolution of Cenp-C …
Particularly interesting are the highly diverged Cid1 and Cid5 paralogs of the Drosophila subgenus, which are probably present in ove …
In Silico Identification and Characterization of Satellite DNAs in 23 Drosophila Species from the Montium Group.
Silva BSML, Picorelli ACR, Kuhn GCS. Silva BSML, et al. Genes (Basel). 2023 Jan 23;14(2):300. doi: 10.3390/genes14020300. Genes (Basel). 2023. PMID: 36833227 Free PMC article.
We took advantage of the recent availability of sequenced genomes from 23 Drosophila species from the montium group to study their satDNA landscape. For this purpose, we used publicly available whole-genome sequencing Illumina reads and the TAREAN (tandem repeat analyzer) …
We took advantage of the recent availability of sequenced genomes from 23 Drosophila species from the montium group to study their sa …
Genomics of ecological adaptation in cactophilic Drosophila.
Guillén Y, Rius N, Delprat A, Williford A, Muyas F, Puig M, Casillas S, Ràmia M, Egea R, Negre B, Mir G, Camps J, Moncunill V, Ruiz-Ruano FJ, Cabrero J, de Lima LG, Dias GB, Ruiz JC, Kapusta A, Garcia-Mas J, Gut M, Gut IG, Torrents D, Camacho JP, Kuhn GC, Feschotte C, Clark AG, Betrán E, Barbadilla A, Ruiz A. Guillén Y, et al. Genome Biol Evol. 2014 Dec 31;7(1):349-66. doi: 10.1093/gbe/evu291. Genome Biol Evol. 2014. PMID: 25552534 Free PMC article.
Cactophilic Drosophila species provide a valuable model to study gene-environment interactions and ecological adaptation. Drosophila buzzatii and Drosophila mojavensis are two cactophilic species that belong to the repleta group, but have very different geogr …
Cactophilic Drosophila species provide a valuable model to study gene-environment interactions and ecological adaptation. Drosophi …
De novo identification of satellite DNAs in the sequenced genomes of Drosophila virilis and D. americana using the RepeatExplorer and TAREAN pipelines.
Silva BSML, Heringer P, Dias GB, Svartman M, Kuhn GCS. Silva BSML, et al. PLoS One. 2019 Dec 19;14(12):e0223466. doi: 10.1371/journal.pone.0223466. eCollection 2019. PLoS One. 2019. PMID: 31856171 Free PMC article.
We applied short-read sequencing and similarity clustering in order to perform a de novo identification of the most abundant satellite families in two Drosophila species from the virilis group: Drosophila virilis and D. americana, using the Tandem Repeat Analyzer (T …
We applied short-read sequencing and similarity clustering in order to perform a de novo identification of the most abundant satellite famil …
Sequence analysis, chromosomal distribution and long-range organization show that rapid turnover of new and old pBuM satellite DNA repeats leads to different patterns of variation in seven species of the Drosophila buzzatii cluster.
Kuhn GC, Sene FM, Moreira-Filho O, Schwarzacher T, Heslop-Harrison JS. Kuhn GC, et al. Chromosome Res. 2008;16(2):307-24. doi: 10.1007/s10577-007-1195-1. Epub 2008 Feb 11. Chromosome Res. 2008. PMID: 18266060
We aimed to study patterns of variation and factors influencing the evolutionary dynamics of a satellite DNA, pBuM, in all seven Drosophila species from the buzzatii cluster (repleta group). We analyzed 117 alpha pBuM-1 (monomer length 190 bp) and 119 composite alpha/beta …
We aimed to study patterns of variation and factors influencing the evolutionary dynamics of a satellite DNA, pBuM, in all seven Drosophi …
27 results