Similar articles for PMID: 29357061

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1

Replication Domains: Genome Compartmentalization into Functional Replication Units.

Zhao PA, Rivera-Mulia JC, Gilbert DM. Zhao PA, et al. Adv Exp Med Biol. 2017;1042:229-257. doi: 10.1007/978-981-10-6955-0_11. Adv Exp Med Biol. 2017. PMID: 29357061 Review.

2

Topologically associating domains are stable units of replication-timing regulation.

Pope BD, Ryba T, Dileep V, Yue F, Wu W, Denas O, Vera DL, Wang Y, Hansen RS, Canfield TK, Thurman RE, Cheng Y, Gülsoy G, Dennis JH, Snyder MP, Stamatoyannopoulos JA, Taylor J, Hardison RC, Kahveci T, Ren B, Gilbert DM. Pope BD, et al. Nature. 2014 Nov 20;515(7527):402-5. doi: 10.1038/nature13986. Nature. 2014. PMID: 25409831 Free PMC article.

3

Large-Scale Chromatin Structure-Function Relationships during the Cell Cycle and Development: Insights from Replication Timing.

Dileep V, Rivera-Mulia JC, Sima J, Gilbert DM. Dileep V, et al. Cold Spring Harb Symp Quant Biol. 2015;80:53-63. doi: 10.1101/sqb.2015.80.027284. Epub 2015 Nov 20. Cold Spring Harb Symp Quant Biol. 2015. PMID: 26590169 Review.

4

Topologically associating domains and their long-range contacts are established during early G1 coincident with the establishment of the replication-timing program.

Dileep V, Ay F, Sima J, Vera DL, Noble WS, Gilbert DM. Dileep V, et al. Genome Res. 2015 Aug;25(8):1104-13. doi: 10.1101/gr.183699.114. Epub 2015 May 20. Genome Res. 2015. PMID: 25995270 Free PMC article.

5

Replication timing and transcriptional control: beyond cause and effect-part III.

Rivera-Mulia JC, Gilbert DM. Rivera-Mulia JC, et al. Curr Opin Cell Biol. 2016 Jun;40:168-178. doi: 10.1016/j.ceb.2016.03.022. Epub 2016 Apr 23. Curr Opin Cell Biol. 2016. PMID: 27115331 Free PMC article. Review.

6

Form and function of topologically associating genomic domains in budding yeast.

Eser U, Chandler-Brown D, Ay F, Straight AF, Duan Z, Noble WS, Skotheim JM. Eser U, et al. Proc Natl Acad Sci U S A. 2017 Apr 11;114(15):E3061-E3070. doi: 10.1073/pnas.1612256114. Epub 2017 Mar 27. Proc Natl Acad Sci U S A. 2017. PMID: 28348222 Free PMC article.

7

Transcription-coupled structural dynamics of topologically associating domains regulate replication origin efficiency.

Li Y, Xue B, Zhang M, Zhang L, Hou Y, Qin Y, Long H, Su QP, Wang Y, Guan X, Jin Y, Cao Y, Li G, Sun Y. Li Y, et al. Genome Biol. 2021 Jul 12;22(1):206. doi: 10.1186/s13059-021-02424-w. Genome Biol. 2021. PMID: 34253239 Free PMC article.

8

HiTAD: detecting the structural and functional hierarchies of topologically associating domains from chromatin interactions.

Wang XT, Cui W, Peng C. Wang XT, et al. Nucleic Acids Res. 2017 Nov 2;45(19):e163. doi: 10.1093/nar/gkx735. Nucleic Acids Res. 2017. PMID: 28977529 Free PMC article.

9

Identifying cis Elements for Spatiotemporal Control of Mammalian DNA Replication.

Sima J, Chakraborty A, Dileep V, Michalski M, Klein KN, Holcomb NP, Turner JL, Paulsen MT, Rivera-Mulia JC, Trevilla-Garcia C, Bartlett DA, Zhao PA, Washburn BK, Nora EP, Kraft K, Mundlos S, Bruneau BG, Ljungman M, Fraser P, Ay F, Gilbert DM. Sima J, et al. Cell. 2019 Feb 7;176(4):816-830.e18. doi: 10.1016/j.cell.2018.11.036. Epub 2018 Dec 27. Cell. 2019. PMID: 30595451 Free PMC article.

10

Active chromatin and transcription play a key role in chromosome partitioning into topologically associating domains.

Ulianov SV, Khrameeva EE, Gavrilov AA, Flyamer IM, Kos P, Mikhaleva EA, Penin AA, Logacheva MD, Imakaev MV, Chertovich A, Gelfand MS, Shevelyov YY, Razin SV. Ulianov SV, et al. Genome Res. 2016 Jan;26(1):70-84. doi: 10.1101/gr.196006.115. Epub 2015 Oct 30. Genome Res. 2016. PMID: 26518482 Free PMC article.

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