Similar articles for PMID: 35181588

Year	Number of Results
1983	1
1990	1
2000	2
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2002	2
2003	2
2004	1
2005	7
2006	1
2007	5
2008	2
2009	3
2010	1
2011	3
2012	3
2013	3
2014	8
2015	12
2016	4
2017	9
2018	13
2019	8
2020	4
2021	6
2022	5

1

Exploring Current Challenges and Perspectives for Automatic Reconstruction of Clonal Evolution.

Sandmann S, Richter S, Jiang X, Varghese J. Sandmann S, et al. Cancer Genomics Proteomics. 2022 Mar-Apr;19(2):194-204. doi: 10.21873/cgp.20314. Cancer Genomics Proteomics. 2022. PMID: 35181588 Free PMC article.

2

ClonEvol: clonal ordering and visualization in cancer sequencing.

Dang HX, White BS, Foltz SM, Miller CA, Luo J, Fields RC, Maher CA. Dang HX, et al. Ann Oncol. 2017 Dec 1;28(12):3076-3082. doi: 10.1093/annonc/mdx517. Ann Oncol. 2017. PMID: 28950321 Free PMC article.

3

SubClonal Hierarchy Inference from Somatic Mutations: Automatic Reconstruction of Cancer Evolutionary Trees from Multi-region Next Generation Sequencing.

Niknafs N, Beleva-Guthrie V, Naiman DQ, Karchin R. Niknafs N, et al. PLoS Comput Biol. 2015 Oct 5;11(10):e1004416. doi: 10.1371/journal.pcbi.1004416. eCollection 2015 Oct. PLoS Comput Biol. 2015. PMID: 26436540 Free PMC article.

4

Reconstructing tumor clonal lineage trees incorporating single-nucleotide variants, copy number alterations and structural variations.

Fu X, Lei H, Tao Y, Schwartz R. Fu X, et al. Bioinformatics. 2022 Jun 24;38(Suppl 1):i125-i133. doi: 10.1093/bioinformatics/btac253. Bioinformatics. 2022. PMID: 35758777 Free PMC article.

5

Clonal reconstruction from time course genomic sequencing data.

Ismail WM, Tang H. Ismail WM, et al. BMC Genomics. 2019 Dec 30;20(Suppl 12):1002. doi: 10.1186/s12864-019-6328-3. BMC Genomics. 2019. PMID: 31888455 Free PMC article.

6

A multi-neighbor-joining approach for phylogenetic tree reconstruction and visualization.

Silva AE, Villanueva WJ, Knidel H, Bonato VC, Reis SF, Von Zuben FJ. Silva AE, et al. Genet Mol Res. 2005 Sep 30;4(3):525-34. Genet Mol Res. 2005. PMID: 16342037

7

ARCANE-ROG: Algorithm for reconstruction of cancer evolution from single-cell data using robust graph learning.

Farswan A, Gupta R, Gupta A. Farswan A, et al. J Biomed Inform. 2022 May;129:104055. doi: 10.1016/j.jbi.2022.104055. Epub 2022 Mar 23. J Biomed Inform. 2022. PMID: 35337943

8

Joint Clustering of Single-Cell Sequencing and Fluorescence In Situ Hybridization Data for Reconstructing Clonal Heterogeneity in Cancers.

Fu X, Lei H, Tao Y, Heselmeyer-Haddad K, Torres I, Dean M, Ried T, Schwartz R. Fu X, et al. J Comput Biol. 2021 Nov;28(11):1035-1051. doi: 10.1089/cmb.2021.0255. Epub 2021 Oct 5. J Comput Biol. 2021. PMID: 34612714

9

Principles of Reconstructing the Subclonal Architecture of Cancers.

Dentro SC, Wedge DC, Van Loo P. Dentro SC, et al. Cold Spring Harb Perspect Med. 2017 Aug 1;7(8):a026625. doi: 10.1101/cshperspect.a026625. Cold Spring Harb Perspect Med. 2017. PMID: 28270531 Free PMC article. Review.

10

Reconstruction of clonal trees and tumor composition from multi-sample sequencing data.

El-Kebir M, Oesper L, Acheson-Field H, Raphael BJ. El-Kebir M, et al. Bioinformatics. 2015 Jun 15;31(12):i62-70. doi: 10.1093/bioinformatics/btv261. Bioinformatics. 2015. PMID: 26072510 Free PMC article.

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