Cited In for PMID: 35879608

Year	Number of Results
2022	7
2023	16
2024	24
2025	28
2026	0

1

Self-supervised deep learning encodes high-resolution features of protein subcellular localization.

Kobayashi H, Cheveralls KC, Leonetti MD, Royer LA. Kobayashi H, et al. Nat Methods. 2022 Aug;19(8):995-1003. doi: 10.1038/s41592-022-01541-z. Epub 2022 Jul 25. Nat Methods. 2022. PMID: 35879608 Free PMC article.

2

Cell-DINO: Self-supervised image-based embeddings for cell fluorescent microscopy.

Moutakanni T, Couprie C, Yi S, Doron M, Chen ZS, Moshkov N, Gardes E, Caron M, Touvron H, Joulin A, Bojanowski P, Pernice WM, Caicedo JC. Moutakanni T, et al. PLoS Comput Biol. 2025 Dec 29;21(12):e1013828. doi: 10.1371/journal.pcbi.1013828. eCollection 2025 Dec. PLoS Comput Biol. 2025. PMID: 41460955 Free PMC article.

3

Cell context-dependent in silico organelle localization in label-free microscopy images.

Elmalam N, Zaritsky A. Elmalam N, et al. Nat Methods. 2025 Dec 19. doi: 10.1038/s41592-025-02960-4. Online ahead of print. Nat Methods. 2025. PMID: 41420046

4

Generalizable morphological profiling of cells by interpretable unsupervised learning.

Murthy RS, Stassen SV, Siu DMD, Lo MCK, Yip GGK, Tsia KK. Murthy RS, et al. Nat Commun. 2025 Dec 11;16(1):11465. doi: 10.1038/s41467-025-66267-w. Nat Commun. 2025. PMID: 41381503 Free PMC article.

5

A deep learning approach for time-consistent cell cycle phase prediction from microscopy data.

Bonte T, Pourcelot O, Safieddine A, Slimani F, Mueller F, Weil D, Bertrand E, Walter T. Bonte T, et al. PLoS Comput Biol. 2025 Dec 11;21(12):e1013800. doi: 10.1371/journal.pcbi.1013800. eCollection 2025 Dec. PLoS Comput Biol. 2025. PMID: 41379930 Free PMC article.

6

Unifying proteomic technologies with ProteinProjector.

Schaffer LV, Jain M, Nasser R, Sharan R, Ideker T. Schaffer LV, et al. Bioinform Adv. 2025 Oct 22;5(1):vbaf266. doi: 10.1093/bioadv/vbaf266. eCollection 2025. Bioinform Adv. 2025. PMID: 41357305 Free PMC article.

7

SubCell: Proteome-aware vision foundation models for microscopy capture single-cell biology.

Gupta A, Wefers Z, Kahnert K, Hansen JN, Misra MK, Leineweber W, Cesnik A, Lu D, Axelsson U, Ballllosera F, Altman RB, Karaletsos T, Lundberg E. Gupta A, et al. bioRxiv [Preprint]. 2025 Oct 30:2024.12.06.627299. doi: 10.1101/2024.12.06.627299. bioRxiv. 2025. PMID: 41278937 Free PMC article. Preprint.

8

Anomaly detection for high-content image-based phenotypic cell profiling.

Shpigler A, Kolet N, Golan S, Weisbart E, Zaritsky A. Shpigler A, et al. Cell Syst. 2025 Nov 19;16(11):101429. doi: 10.1016/j.cels.2025.101429. Epub 2025 Oct 29. Cell Syst. 2025. PMID: 41167192 Free article.

9

AI-based hardware and software tools in microscopy to boost research in immunology and virology.

Morone D, D'Antuono R. Morone D, et al. Front Immunol. 2025 Sep 30;16:1610345. doi: 10.3389/fimmu.2025.1610345. eCollection 2025. Front Immunol. 2025. PMID: 41098742 Free PMC article. Review.

10

Quantifying HiPSC-CM structural organization at scale with deep learning-enhanced SarcGraph.

Mohammadzadeh S, Lejeune E. Mohammadzadeh S, et al. PLoS Comput Biol. 2025 Oct 3;21(10):e1013436. doi: 10.1371/journal.pcbi.1013436. eCollection 2025 Oct. PLoS Comput Biol. 2025. PMID: 41042829 Free PMC article.

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Cited In for PMID: 35879608

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