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2015 1
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2017 9
2018 4
2019 5
2020 4
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2023 3
2024 0

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Page 1
Differential pre-malignant programs and microenvironment chart distinct paths to malignancy in human colorectal polyps.
Chen B, Scurrah CR, McKinley ET, Simmons AJ, Ramirez-Solano MA, Zhu X, Markham NO, Heiser CN, Vega PN, Rolong A, Kim H, Sheng Q, Drewes JL, Zhou Y, Southard-Smith AN, Xu Y, Ro J, Jones AL, Revetta F, Berry LD, Niitsu H, Islam M, Pelka K, Hofree M, Chen JH, Sarkizova S, Ng K, Giannakis M, Boland GM, Aguirre AJ, Anderson AC, Rozenblatt-Rosen O, Regev A, Hacohen N, Kawasaki K, Sato T, Goettel JA, Grady WM, Zheng W, Washington MK, Cai Q, Sears CL, Goldenring JR, Franklin JL, Su T, Huh WJ, Vandekar S, Roland JT, Liu Q, Coffey RJ, Shrubsole MJ, Lau KS. Chen B, et al. Cell. 2021 Dec 22;184(26):6262-6280.e26. doi: 10.1016/j.cell.2021.11.031. Epub 2021 Dec 14. Cell. 2021. PMID: 34910928 Free PMC article.
Single-Cell Transcriptomics Reveals a Conserved Metaplasia Program in Pancreatic Injury.
Ma Z, Lytle NK, Chen B, Jyotsana N, Novak SW, Cho CJ, Caplan L, Ben-Levy O, Neininger AC, Burnette DT, Trinh VQ, Tan MCB, Patterson EA, Arrojo E Drigo R, Giraddi RR, Ramos C, Means AL, Matsumoto I, Manor U, Mills JC, Goldenring JR, Lau KS, Wahl GM, DelGiorno KE. Ma Z, et al. Gastroenterology. 2022 Feb;162(2):604-620.e20. doi: 10.1053/j.gastro.2021.10.027. Epub 2021 Oct 23. Gastroenterology. 2022. PMID: 34695382 Free PMC article.
Succinate Produced by Intestinal Microbes Promotes Specification of Tuft Cells to Suppress Ileal Inflammation.
Banerjee A, Herring CA, Chen B, Kim H, Simmons AJ, Southard-Smith AN, Allaman MM, White JR, Macedonia MC, Mckinley ET, Ramirez-Solano MA, Scoville EA, Liu Q, Wilson KT, Coffey RJ, Washington MK, Goettel JA, Lau KS. Banerjee A, et al. Gastroenterology. 2020 Dec;159(6):2101-2115.e5. doi: 10.1053/j.gastro.2020.08.029. Epub 2020 Aug 21. Gastroenterology. 2020. PMID: 32828819 Free PMC article.
The influence of evolutionary history on human health and disease.
Benton ML, Abraham A, LaBella AL, Abbot P, Rokas A, Capra JA. Benton ML, et al. Nat Rev Genet. 2021 May;22(5):269-283. doi: 10.1038/s41576-020-00305-9. Epub 2021 Jan 6. Nat Rev Genet. 2021. PMID: 33408383 Free PMC article. Review.
Microbiome-associated human genetic variants impact phenome-wide disease risk.
Markowitz RHG, LaBella AL, Shi M, Rokas A, Capra JA, Ferguson JF, Mosley JD, Bordenstein SR. Markowitz RHG, et al. Proc Natl Acad Sci U S A. 2022 Jun 28;119(26):e2200551119. doi: 10.1073/pnas.2200551119. Epub 2022 Jun 24. Proc Natl Acad Sci U S A. 2022. PMID: 35749358 Free PMC article.
Functional annotation of rare structural variation in the human brain.
Han L, Zhao X, Benton ML, Perumal T, Collins RL, Hoffman GE, Johnson JS, Sloofman L, Wang HZ, Stone MR; CommonMind Consortium; Brennand KJ, Brand H, Sieberts SK, Marenco S, Peters MA, Lipska BK, Roussos P, Capra JA, Talkowski M, Ruderfer DM. Han L, et al. Nat Commun. 2020 Jun 12;11(1):2990. doi: 10.1038/s41467-020-16736-1. Nat Commun. 2020. PMID: 32533064 Free PMC article.
MTG16 regulates colonic epithelial differentiation, colitis, and tumorigenesis by repressing E protein transcription factors.
Brown RE, Jacobse J, Anant SA, Blunt KM, Chen B, Vega PN, Jones CT, Pilat JM, Revetta F, Gorby AH, Stengel KR, Choksi YA, Palin K, Piazuelo MB, Washington MK, Lau KS, Goettel JA, Hiebert SW, Short SP, Williams CS. Brown RE, et al. JCI Insight. 2022 May 23;7(10):e153045. doi: 10.1172/jci.insight.153045. JCI Insight. 2022. PMID: 35503250 Free PMC article.
Multi-Modal and Targeted Imaging Improves Automated Mid-Brain Segmentation.
Plassard AJ, D'Haese PF, Pallavaram S, Newton AT, Claassen DO, Dawant BM, Landman BA. Plassard AJ, et al. Proc SPIE Int Soc Opt Eng. 2017 Feb 11;10133:101330J. doi: 10.1117/12.2254428. Epub 2017 Feb 24. Proc SPIE Int Soc Opt Eng. 2017. PMID: 28781412 Free PMC article.
GEneSTATION 1.0: a synthetic resource of diverse evolutionary and functional genomic data for studying the evolution of pregnancy-associated tissues and phenotypes.
Kim M, Cooper BA, Venkat R, Phillips JB, Eidem HR, Hirbo J, Nutakki S, Williams SM, Muglia LJ, Capra JA, Petren K, Abbot P, Rokas A, McGary KL. Kim M, et al. Nucleic Acids Res. 2016 Jan 4;44(D1):D908-16. doi: 10.1093/nar/gkv1137. Epub 2015 Nov 14. Nucleic Acids Res. 2016. PMID: 26567549 Free PMC article.
Dual indexed library design enables compatibility of in-Drop single-cell RNA-sequencing with exAMP chemistry sequencing platforms.
Southard-Smith AN, Simmons AJ, Chen B, Jones AL, Ramirez Solano MA, Vega PN, Scurrah CR, Zhao Y, Brenan MJ, Xuan J, Shrubsole MJ, Porter EB, Chen X, Brenan CJH, Liu Q, Quigley LNM, Lau KS. Southard-Smith AN, et al. BMC Genomics. 2020 Jul 2;21(1):456. doi: 10.1186/s12864-020-06843-0. BMC Genomics. 2020. PMID: 32616006 Free PMC article.