Borchers CH - Search Results

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367 results

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Optimization of bottom-up proteomic sample preparation by design of experiments for absolute quantification of 257 proteins in human plasma using UPLC-MRM-MS.

Arnarson K, Y Holm K, Gunnarsdottir Thormar V, Eiríksson FF, Mohammed Y, Borchers CH, Bodvarsdottir SK, Thorsteinsdottir M. Arnarson K, et al. Expert Rev Proteomics. 2025 May;22(5):209-216. doi: 10.1080/14789450.2025.2504994. Epub 2025 May 22. Expert Rev Proteomics. 2025. PMID: 40396504 Free article.

MRM-based multiplexed quantitation of 67 putative cardiovascular disease biomarkers in human plasma.

Domanski D, Percy AJ, Yang J, Chambers AG, Hill JS, Freue GV, Borchers CH. Domanski D, et al. Proteomics. 2012 Apr;12(8):1222-43. doi: 10.1002/pmic.201100568. Proteomics. 2012. PMID: 22577024

Multiplexed MRM-based quantitation of candidate cancer biomarker proteins in undepleted and non-enriched human plasma.

Percy AJ, Chambers AG, Yang J, Borchers CH. Percy AJ, et al. Proteomics. 2013 Jul;13(14):2202-15. doi: 10.1002/pmic.201200316. Epub 2013 Jun 6. Proteomics. 2013. PMID: 23592487

MRM for the verification of cancer biomarker proteins: recent applications to human plasma and serum.

Chambers AG, Percy AJ, Simon R, Borchers CH. Chambers AG, et al. Expert Rev Proteomics. 2014 Apr;11(2):137-48. doi: 10.1586/14789450.2014.877346. Epub 2014 Jan 29. Expert Rev Proteomics. 2014. PMID: 24476379 Review.

PeptidePicker: a scientific workflow with web interface for selecting appropriate peptides for targeted proteomics experiments.

Mohammed Y, Domański D, Jackson AM, Smith DS, Deelder AM, Palmblad M, Borchers CH. Mohammed Y, et al. J Proteomics. 2014 Jun 25;106:151-61. doi: 10.1016/j.jprot.2014.04.018. Epub 2014 Apr 22. J Proteomics. 2014. PMID: 24769191

Qualis-SIS: automated standard curve generation and quality assessment for multiplexed targeted quantitative proteomic experiments with labeled standards.

Mohammed Y, Percy AJ, Chambers AG, Borchers CH. Mohammed Y, et al. J Proteome Res. 2015 Feb 6;14(2):1137-46. doi: 10.1021/pr5010955. Epub 2015 Jan 16. J Proteome Res. 2015. PMID: 25546269

An extensive library of surrogate peptides for all human proteins.

Mohammed Y, Borchers CH. Mohammed Y, et al. J Proteomics. 2015 Nov 3;129:93-97. doi: 10.1016/j.jprot.2015.07.025. Epub 2015 Jul 29. J Proteomics. 2015. PMID: 26232110

A standardized kit for automated quantitative assessment of candidate protein biomarkers in human plasma.

Percy AJ, Mohammed Y, Yang J, Borchers CH. Percy AJ, et al. Bioanalysis. 2015 Dec;7(23):2991-3004. doi: 10.4155/bio.15.222. Epub 2015 Dec 2. Bioanalysis. 2015. PMID: 26626236 Free article.

Multiplexed panel of precisely quantified salivary proteins for biomarker assessment.

Percy AJ, Hardie DB, Jardim A, Yang J, Elliott MH, Zhang S, Mohammed Y, Borchers CH. Percy AJ, et al. Proteomics. 2017 Mar;17(6). doi: 10.1002/pmic.201600230. Epub 2016 Oct 19. Proteomics. 2017. PMID: 27538354

PeptideTracker: A knowledge base for collecting and storing information on protein concentrations in biological tissues.

Mohammed Y, Bhowmick P, Smith DS, Domanski D, Jackson AM, Michaud SA, Malchow S, Percy AJ, Chambers AG, Palmer A, Zhang S, Sickmann A, Borchers CH. Mohammed Y, et al. Proteomics. 2017 Apr;17(7). doi: 10.1002/pmic.201600210. Epub 2016 Dec 14. Proteomics. 2017. PMID: 27683069 No abstract available.

Multiplexed MRM-based assays for the quantitation of proteins in mouse plasma and heart tissue.

Percy AJ, Michaud SA, Jardim A, Sinclair NJ, Zhang S, Mohammed Y, Palmer AL, Hardie DB, Yang J, LeBlanc AM, Borchers CH. Percy AJ, et al. Proteomics. 2017 Apr;17(7). doi: 10.1002/pmic.201600097. Epub 2016 Nov 18. Proteomics. 2017. PMID: 27688154

Protocol for Standardizing High-to-Moderate Abundance Protein Biomarker Assessments Through an MRM-with-Standard-Peptides Quantitative Approach.

Percy AJ, Yang J, Chambers AG, Mohammed Y, Miliotis T, Borchers CH. Percy AJ, et al. Adv Exp Med Biol. 2016;919:515-530. doi: 10.1007/978-3-319-41448-5_24. Adv Exp Med Biol. 2016. PMID: 27975233 Review.

Immuno-Matrix-Assisted Laser Desorption/Ionization Assays for Quantifying AKT1 and AKT2 in Breast and Colorectal Cancer Cell Lines and Tumors.

Popp R, Li H, LeBlanc A, Mohammed Y, Aguilar-Mahecha A, Chambers AG, Lan C, Poetz O, Basik M, Batist G, Borchers CH. Popp R, et al. Anal Chem. 2017 Oct 3;89(19):10592-10600. doi: 10.1021/acs.analchem.7b02934. Epub 2017 Sep 20. Anal Chem. 2017. PMID: 28853539

ExSTA: External Standard Addition Method for Accurate High-Throughput Quantitation in Targeted Proteomics Experiments.

Mohammed Y, Pan J, Zhang S, Han J, Borchers CH. Mohammed Y, et al. Proteomics Clin Appl. 2018 Mar;12(2):1600180. doi: 10.1002/prca.201600180. Epub 2017 Oct 25. Proteomics Clin Appl. 2018. PMID: 28895300 Free PMC article.

Multiplexed targeted proteomic assay to assess coagulation factor concentrations and thrombosis-associated cancer.

Mohammed Y, van Vlijmen BJ, Yang J, Percy AJ, Palmblad M, Borchers CH, Rosendaal FR. Mohammed Y, et al. Blood Adv. 2017 Jun 20;1(15):1080-1087. doi: 10.1182/bloodadvances.2017007955. eCollection 2017 Jun 27. Blood Adv. 2017. PMID: 29296750 Free PMC article.

MRMAssayDB: an integrated resource for validated targeted proteomics assays.

Bhowmick P, Mohammed Y, Borchers CH. Bhowmick P, et al. Bioinformatics. 2018 Oct 15;34(20):3566-3571. doi: 10.1093/bioinformatics/bty385. Bioinformatics. 2018. PMID: 29762640 Free PMC article.

Detecting post-translational modification signatures as potential biomarkers in clinical mass spectrometry.

Mnatsakanyan R, Shema G, Basik M, Batist G, Borchers CH, Sickmann A, Zahedi RP. Mnatsakanyan R, et al. Expert Rev Proteomics. 2018 Jun;15(6):515-535. doi: 10.1080/14789450.2018.1483340. Expert Rev Proteomics. 2018. PMID: 29893147 Free article.

Immuno-MALDI (iMALDI) mass spectrometry for the analysis of proteins in signaling pathways.

Popp R, Li H, Borchers CH. Popp R, et al. Expert Rev Proteomics. 2018 Sep;15(9):701-708. doi: 10.1080/14789450.2018.1516147. Epub 2018 Sep 17. Expert Rev Proteomics. 2018. PMID: 30169113 Review.

Molecular phenotyping of laboratory mouse strains using 500 multiple reaction monitoring mass spectrometry plasma assays.

Michaud SA, Sinclair NJ, Pětrošová H, Palmer AL, Pistawka AJ, Zhang S, Hardie DB, Mohammed Y, Eshghi A, Richard VR, Sickmann A, Borchers CH. Michaud SA, et al. Commun Biol. 2018 Jun 27;1:78. doi: 10.1038/s42003-018-0087-6. eCollection 2018. Commun Biol. 2018. PMID: 30271959 Free PMC article.

The intestinal microbiome potentially affects thrombin generation in human subjects.

Mohammed Y, Kootte RS, Kopatz WF, Borchers CH, Büller HR, Versteeg HH, Nieuwdorp M, van Mens TE. Mohammed Y, et al. J Thromb Haemost. 2020 Mar;18(3):642-650. doi: 10.1111/jth.14699. Epub 2019 Dec 27. J Thromb Haemost. 2020. PMID: 31808596 Free PMC article. Clinical Trial.

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