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Sex without crossing over in the yeast Saccharomycodes ludwigii.
Papaioannou IA, Dutreux F, Peltier FA, Maekawa H, Delhomme N, Bardhan A, Friedrich A, Schacherer J, Knop M. Papaioannou IA, et al. Among authors: delhomme n. Genome Biol. 2021 Nov 3;22(1):303. doi: 10.1186/s13059-021-02521-w. Genome Biol. 2021. PMID: 34732243 Free PMC article.
An atlas of the Norway spruce needle seasonal transcriptome.
Bag P, Lihavainen J, Delhomme N, Riquelme T, Robinson KM, Jansson S. Bag P, et al. Among authors: delhomme n. Plant J. 2021 Oct 8. doi: 10.1111/tpj.15530. Online ahead of print. Plant J. 2021. PMID: 34624161
ProkSeq for complete analysis of RNA-Seq data from prokaryotes.
Firoj Mahmud AKM, Delhomme N, Nandi S, Fällman M. Firoj Mahmud AKM, et al. Among authors: delhomme n. Bioinformatics. 2020 Dec 26;37(1):126-8. doi: 10.1093/bioinformatics/btaa1063. Online ahead of print. Bioinformatics. 2020. PMID: 33367516 Free PMC article.
Ethylene Signaling Is Required for Fully Functional Tension Wood in Hybrid Aspen.
Seyfferth C, Wessels BA, Gorzsás A, Love JW, Rüggeberg M, Delhomme N, Vain T, Antos K, Tuominen H, Sundberg B, Felten J. Seyfferth C, et al. Among authors: delhomme n. Front Plant Sci. 2019 Sep 26;10:1101. doi: 10.3389/fpls.2019.01101. eCollection 2019. Front Plant Sci. 2019. PMID: 31611886 Free PMC article.
Functional and evolutionary genomic inferences in Populus through genome and population sequencing of American and European aspen.
Lin YC, Wang J, Delhomme N, Schiffthaler B, Sundström G, Zuccolo A, Nystedt B, Hvidsten TR, de la Torre A, Cossu RM, Hoeppner MP, Lantz H, Scofield DG, Zamani N, Johansson A, Mannapperuma C, Robinson KM, Mähler N, Leitch IJ, Pellicer J, Park EJ, Van Montagu M, Van de Peer Y, Grabherr M, Jansson S, Ingvarsson PK, Street NR. Lin YC, et al. Among authors: delhomme n. Proc Natl Acad Sci U S A. 2018 Nov 13;115(46):E10970-E10978. doi: 10.1073/pnas.1801437115. Epub 2018 Oct 29. Proc Natl Acad Sci U S A. 2018. PMID: 30373829 Free PMC article.
A genetic network mediating the control of bud break in hybrid aspen.
Singh RK, Maurya JP, Azeez A, Miskolczi P, Tylewicz S, Stojkovič K, Delhomme N, Busov V, Bhalerao RP. Singh RK, et al. Among authors: delhomme n. Nat Commun. 2018 Oct 9;9(1):4173. doi: 10.1038/s41467-018-06696-y. Nat Commun. 2018. PMID: 30301891 Free PMC article.
Ethylene-Related Gene Expression Networks in Wood Formation.
Seyfferth C, Wessels B, Jokipii-Lukkari S, Sundberg B, Delhomme N, Felten J, Tuominen H. Seyfferth C, et al. Front Plant Sci. 2018 Mar 14;9:272. doi: 10.3389/fpls.2018.00272. eCollection 2018. Front Plant Sci. 2018. PMID: 29593753 Free PMC article.
Darkened Leaves Use Different Metabolic Strategies for Senescence and Survival.
Law SR, Chrobok D, Juvany M, Delhomme N, Lindén P, Brouwer B, Ahad A, Moritz T, Jansson S, Gardeström P, Keech O. Law SR, et al. Among authors: delhomme n. Plant Physiol. 2018 May;177(1):132-150. doi: 10.1104/pp.18.00062. Epub 2018 Mar 9. Plant Physiol. 2018. PMID: 29523713 Free PMC article.
AspWood: High-Spatial-Resolution Transcriptome Profiles Reveal Uncharacterized Modularity of Wood Formation in Populus tremula.
Sundell D, Street NR, Kumar M, Mellerowicz EJ, Kucukoglu M, Johnsson C, Kumar V, Mannapperuma C, Delhomme N, Nilsson O, Tuominen H, Pesquet E, Fischer U, Niittylä T, Sundberg B, Hvidsten TR. Sundell D, et al. Plant Cell. 2017 Jul;29(7):1585-1604. doi: 10.1105/tpc.17.00153. Epub 2017 Jun 27. Plant Cell. 2017. PMID: 28655750 Free PMC article.
A Key Role for Apoplastic H2O2 in Norway Spruce Phenolic Metabolism.
Laitinen T, Morreel K, Delhomme N, Gauthier A, Schiffthaler B, Nickolov K, Brader G, Lim KJ, Teeri TH, Street NR, Boerjan W, Kärkönen A. Laitinen T, et al. Plant Physiol. 2017 Jul;174(3):1449-1475. doi: 10.1104/pp.17.00085. Epub 2017 May 18. Plant Physiol. 2017. PMID: 28522458 Free PMC article.
The Plant Genome Integrative Explorer Resource: PlantGenIE.org.
Sundell D, Mannapperuma C, Netotea S, Delhomme N, Lin YC, Sjödin A, Van de Peer Y, Jansson S, Hvidsten TR, Street NR. Sundell D, et al. New Phytol. 2015 Dec;208(4):1149-56. doi: 10.1111/nph.13557. Epub 2015 Jul 20. New Phytol. 2015. PMID: 26192091
Populus tremula (European aspen) shows no evidence of sexual dimorphism.
Robinson KM, Delhomme N, Mähler N, Schiffthaler B, Onskog J, Albrectsen BR, Ingvarsson PK, Hvidsten TR, Jansson S, Street NR. Robinson KM, et al. Among authors: delhomme n. BMC Plant Biol. 2014 Oct 16;14:276. doi: 10.1186/s12870-014-0276-5. BMC Plant Biol. 2014. PMID: 25318822 Free PMC article.
The Norway spruce genome sequence and conifer genome evolution.
Nystedt B, Street NR, Wetterbom A, Zuccolo A, Lin YC, Scofield DG, Vezzi F, Delhomme N, Giacomello S, Alexeyenko A, Vicedomini R, Sahlin K, Sherwood E, Elfstrand M, Gramzow L, Holmberg K, Hällman J, Keech O, Klasson L, Koriabine M, Kucukoglu M, Käller M, Luthman J, Lysholm F, Niittylä T, Olson A, Rilakovic N, Ritland C, Rosselló JA, Sena J, Svensson T, Talavera-López C, Theißen G, Tuominen H, Vanneste K, Wu ZQ, Zhang B, Zerbe P, Arvestad L, Bhalerao R, Bohlmann J, Bousquet J, Garcia Gil R, Hvidsten TR, de Jong P, MacKay J, Morgante M, Ritland K, Sundberg B, Thompson SL, Van de Peer Y, Andersson B, Nilsson O, Ingvarsson PK, Lundeberg J, Jansson S. Nystedt B, et al. Nature. 2013 May 30;497(7451):579-84. doi: 10.1038/nature12211. Epub 2013 May 22. Nature. 2013. PMID: 23698360
The genomic and transcriptomic landscape of a HeLa cell line.
Landry JJ, Pyl PT, Rausch T, Zichner T, Tekkedil MM, Stütz AM, Jauch A, Aiyar RS, Pau G, Delhomme N, Gagneur J, Korbel JO, Huber W, Steinmetz LM. Landry JJ, et al. G3 (Bethesda). 2013 Aug 7;3(8):1213-24. doi: 10.1534/g3.113.005777. G3 (Bethesda). 2013. PMID: 23550136 Free PMC article.
easyRNASeq: a bioconductor package for processing RNA-Seq data.
Delhomme N, Padioleau I, Furlong EE, Steinmetz LM. Delhomme N, et al. Bioinformatics. 2012 Oct 1;28(19):2532-3. doi: 10.1093/bioinformatics/bts477. Epub 2012 Jul 30. Bioinformatics. 2012. PMID: 22847932 Free PMC article.