P20 GM103418/GM/NIGMS NIH HHS/United States[Grants and Funding] - Search Results

Year	Number of Results
2004	2
2005	1
2006	1
2008	6
2009	7
2010	11
2011	21
2012	30
2013	46
2014	65
2015	72
2016	100
2017	90
2018	90
2019	92
2020	94
2021	95
2022	85
2023	85
2024	67
2025	53

1

Dietary influence on lung injury and immune modulation in cadmium-exposed mice.

Prasad C, Dasgupta D, Tripathi A, Steele N, Duraisamy SK, Pyaram K, Sundar IK. Prasad C, et al. Am J Physiol Lung Cell Mol Physiol. 2025 Nov 1;329(5):L642-L657. doi: 10.1152/ajplung.00196.2025. Epub 2025 Oct 6. Am J Physiol Lung Cell Mol Physiol. 2025. PMID: 41051968 Free article.

2

Extracellular Vesicle miRNAs as Biomarkers of Asthma Severity.

Prasad C, Griffard R, Pei D, Haworth S, Dhillon NK, Castro M, Sundar IK. Prasad C, et al. Allergy. 2025 Sep 30. doi: 10.1111/all.70079. Online ahead of print. Allergy. 2025. PMID: 41025688 No abstract available.

3

Temporal dynamics of CNS cholesterol esters correlate with demyelination and remyelination.

De Silva Mohotti N, Williams JM, Binjawadagi R, Kobayashi H, Dedunupitiya D, Petersen JM, Garcia A, Hartley MD. De Silva Mohotti N, et al. bioRxiv [Preprint]. 2025 Sep 11:2025.09.06.674663. doi: 10.1101/2025.09.06.674663. bioRxiv. 2025. PMID: 40964387 Free PMC article. Preprint.

4

Single-cell transcriptomic profiling of C. elegans Q neuroblast lineage during migration and differentiation.

Teixeira FL, Sanderson B, Hackett JL, Lundquist EA. Teixeira FL, et al. bioRxiv [Preprint]. 2025 Sep 11:2025.09.09.675151. doi: 10.1101/2025.09.09.675151. bioRxiv. 2025. PMID: 40964368 Free PMC article. Preprint.

5

The effects of brines relevant to Mars and the ocean worlds on bacterial growth reflect salt-specific responses across water activity.

Zbeeb HZ, Joad MD, Zayed HH, Mahdi A, Chen F, Clark BC, Luhring TM, Schneegurt MA. Zbeeb HZ, et al. Arch Microbiol. 2025 Sep 9;207(10):258. doi: 10.1007/s00203-025-04418-9. Arch Microbiol. 2025. PMID: 40924165 Free PMC article.

6

Equivalency Between the Generalized Bivariate Bernoulli Model Dependency Test and a Logistic Regression Model With Interaction Effects.

Mahmud KMF, Li Y, Koestler DC. Mahmud KMF, et al. Stat Med. 2025 Sep;44(20-22):e70260. doi: 10.1002/sim.70260. Stat Med. 2025. PMID: 40916462

7

Nrf2 drives activation-driven expansion of CD4⁺T cells by modulating glucose and glutamine metabolism.

Tripathi A, Dasgupta D, Dahabieh MS, Griffard-Smith R, Pant A, Bugbee A, Yellapu NK, Burt E, Choi BHY, Ellis AE, Sheldon RD, Giri S, Koestler D, Jones RG, Yadav VN, Pyaram K. Tripathi A, et al. Cell Rep. 2025 Sep 23;44(9):116177. doi: 10.1016/j.celrep.2025.116177. Epub 2025 Aug 25. Cell Rep. 2025. PMID: 40857154 Free PMC article.

8

Extreme QTL mapping enables the identification of novel zinc toxicity response loci in Drosophila melanogaster.

Hanson KM, Long AD, Macdonald SJ. Hanson KM, et al. Genetics. 2025 Nov 12;231(3):iyaf173. doi: 10.1093/genetics/iyaf173. Genetics. 2025. PMID: 40839771 Free PMC article.

9

Metabolites derived from bacterial isolates of the human skin microbiome inhibit Staphylococcus aureus biofilm formation.

Le VH, King T, Wuerzberger B, Bauer OR, Carver MN, Chan TS, Henson AL, Hubbard GK, Kopadze T, Patterson CF, McGraw SM, O'Hara A, Yarkosky EJ, LaMontagne MG, Hotze EM, Ferreira RBR. Le VH, et al. Microbiol Spectr. 2025 Sep 2;13(9):e0130625. doi: 10.1128/spectrum.01306-25. Epub 2025 Aug 5. Microbiol Spectr. 2025. PMID: 40762463 Free PMC article.

10

Quorum sensing regulation by the nitrogen phosphotransferase system in Pseudomonas aeruginosa.

Banerjee S, Smalley NE, Saenjamsai P, Fehr AR, Dandekar AA, Cabeen MT, Chandler JR. Banerjee S, et al. J Bacteriol. 2025 Aug 21;207(8):e0004825. doi: 10.1128/jb.00048-25. Epub 2025 Aug 1. J Bacteriol. 2025. PMID: 40748077 Free PMC article.

11

From learning to reversal learning: How non-cleaner fish tackle the biological market task.

Prétôt L, Miller H, Leyden K. Prétôt L, et al. Anim Cogn. 2025 Jul 24;28(1):61. doi: 10.1007/s10071-025-01983-w. Anim Cogn. 2025. PMID: 40705148 Free PMC article.

12

Variation of and associations with the depth and evenness of sequencing coverage in archived plastid genomes.

Jenke N, Smith GM, Magar BT, Gruenstaeudl M. Jenke N, et al. Sci Rep. 2025 Jul 19;15(1):26294. doi: 10.1038/s41598-025-11568-9. Sci Rep. 2025. PMID: 40683932 Free PMC article.

13

Proteomic and metabolic profiling reveals APOE4-dependent shifts in whole brain, neuronal, and astrocytic mitochondrial function and glycolysis.

Lysaker CR, Johnson CN, Csikos V, Franczak E, Benson M, Gilmore CA, Birky CJ, Davis X, McCoin CS, Smith KP, Puchalska P, Crawford P, Slawson C, Thyfault JP, Geiger PC, Morris JK, Wilkins HM. Lysaker CR, et al. bioRxiv [Preprint]. 2025 Jun 16:2025.06.15.659811. doi: 10.1101/2025.06.15.659811. bioRxiv. 2025. PMID: 40666931 Free PMC article. Preprint.

14

Exercise-induced microbiota metabolite enhances CD8 T cell antitumor immunity promoting immunotherapy efficacy.

Phelps CM, Willis NB, Duan T, Lee AH, Zhang Y, Rodriguez J DM, Pandey SP, Laughlin CR, Rosen ABI, McPherson AC, Shapira JH, Randhawa SK, Hedden L, Richie TG, Wiechman HM, Bender MJ, Nemet I, Zöhrer PA, Gottschalk RA, Schmitz KH, Mullett SJ, Gelhaus SL, Davar D, Zarour HM, Hinterleitner R, Mossington T, Badger JH, Rodrigues RR, McCulloch JA, Lee STM, Wagner KH, Winter MG, Winter SE, Das J, Pierre JF, Trinchieri G, Meisel M. Phelps CM, et al. Cell. 2025 Oct 2;188(20):5680-5700.e28. doi: 10.1016/j.cell.2025.06.018. Epub 2025 Jul 9. Cell. 2025. PMID: 40639377

15

High-throughput genetic mapping discovers novel zinc toxicity response loci in Drosophila melanogaster.

Hanson KM, Long AD, Macdonald SJ. Hanson KM, et al. bioRxiv [Preprint]. 2025 Jun 19:2025.06.12.659401. doi: 10.1101/2025.06.12.659401. bioRxiv. 2025. Update in: Genetics. 2025 Nov 12;231(3):iyaf173. doi: 10.1093/genetics/iyaf173. PMID: 40611908 Free PMC article. Updated. Preprint.

16

Therapeutic potential of NRF2 activating drug RTA-408 in suppressing T cell effector responses and inflammatory bowel disease.

Dasgupta D, Tripathi A, Griffard-Smith R, Yellapu N, Dhorajiya P, Pyaram K. Dasgupta D, et al. J Immunol. 2025 Aug 1;214(8):1951-1968. doi: 10.1093/jimmun/vkaf117. J Immunol. 2025. PMID: 40570091

17

Monkeyflower (Mimulus) uncovers the evolutionary basis of the eukaryote telomere sequence variation.

Kumawat S, Shametov A, Valeeva LR, Ju Y, Martinez I, Logeswaran D, Chen H, Coughlan JM, Chen JJ, Yuan YW, Sobel JM, Koo DH, Shakirov EV, Choi JY. Kumawat S, et al. PLoS Genet. 2025 Jun 16;21(6):e1011738. doi: 10.1371/journal.pgen.1011738. eCollection 2025 Jun. PLoS Genet. 2025. PMID: 40523014 Free PMC article.

18

Comparative transcriptomic profiling of drug-metabolizing enzymes and drug transporters in rabbit ocular subtissues, liver, and duodenum.

Li M, Sanderson BJ, Hackett JL, Niyangoda SS, Gong H, Johnson MA, Wang MZ. Li M, et al. Drug Metab Dispos. 2025 Jul;53(7):100099. doi: 10.1016/j.dmd.2025.100099. Epub 2025 May 20. Drug Metab Dispos. 2025. PMID: 40505410 Free PMC article.

19

Drosophila models uncover substrate channeling effects on phospholipids and sphingolipids in peroxisomal biogenesis disorders.

Wangler MF, Chao YH, Roth M, Welti R, McNew JA. Wangler MF, et al. PLoS One. 2025 Jun 11;20(6):e0324143. doi: 10.1371/journal.pone.0324143. eCollection 2025. PLoS One. 2025. PMID: 40498764 Free PMC article.

20

IFN-γ signaling is required for the efficient replication of murine hepatitis virus (MHV) strain JHM in the brains of infected mice.

Kerr CM, Proctor-Roser MA, Parthasarathy S, O'Connor JJ, Pfannenstiel JJ, Orozco RC, Fehr AR. Kerr CM, et al. PLoS One. 2025 Jun 5;20(6):e0317482. doi: 10.1371/journal.pone.0317482. eCollection 2025. PLoS One. 2025. PMID: 40471948 Free PMC article.

21

Modulation of pain by ketones: a mini-review.

Heslop LL, Wright DE. Heslop LL, et al. Am J Physiol Cell Physiol. 2025 Jul 1;329(1):C31-C37. doi: 10.1152/ajpcell.00305.2025. Epub 2025 May 28. Am J Physiol Cell Physiol. 2025. PMID: 40434098 Free PMC article. Review.

22

Identification of a series of pyrrolo-pyrimidine-based SARS-CoV-2 Mac1 inhibitors that repress coronavirus replication.

Pfannenstiel JJ, Duong MTH, Cluff D, Sherrill LM, Colquhoun I, Cadoux G, Thorne D, Pääkkönen J, Schemmel NF, O'Connor J, Saenjamsai P, Feng M, Parthasarathy S, Hageman MJ, Johnson DK, Roy A, Lehtiö L, Ferraris DV, Fehr AR. Pfannenstiel JJ, et al. mBio. 2025 Jun 11;16(6):e0386524. doi: 10.1128/mbio.03865-24. Epub 2025 May 23. mBio. 2025. PMID: 40407321 Free PMC article.

23

Reduced cholesterol alters the biophysical properties of repaired myelin.

Nottar Escobar EL, De Silva Mohotti N, Manolescu M, Radadiya A, Dhar P, Hartley MD. Nottar Escobar EL, et al. Biochim Biophys Acta Mol Cell Biol Lipids. 2025 Jun;1870(5):159637. doi: 10.1016/j.bbalip.2025.159637. Epub 2025 May 20. Biochim Biophys Acta Mol Cell Biol Lipids. 2025. PMID: 40403837 Free PMC article.

24

Visual feedback and motor memory contributions to sustained motor control deficits in autism spectrum disorder across childhood and into adulthood.

Shafer RL, Bartolotti J, Driggers A, Bojanek E, Wang Z, Mosconi MW. Shafer RL, et al. J Neurodev Disord. 2025 May 16;17(1):26. doi: 10.1186/s11689-025-09607-7. J Neurodev Disord. 2025. PMID: 40380091 Free PMC article.

25

Reduced liver mitochondrial energy metabolism impairs food intake regulation following gastric preloads and fasting.

Ponte ME, Prom JC, Newcomb MA, Jordan AB, Comfort LL, Hu J, Puchalska P, Koestler DC, Geisler CE, Hayes MR, Morris EM. Ponte ME, et al. Mol Metab. 2025 Jul;97:102167. doi: 10.1016/j.molmet.2025.102167. Epub 2025 May 12. Mol Metab. 2025. PMID: 40368160 Free PMC article.

26

Integrated structural model of the palladin-actin complex using XL-MS, docking, NMR, and SAXS.

Sargent R, Liu DH, Yadav R, Glennenmeier D, Bradford C, Urbina N, Beck MR. Sargent R, et al. Protein Sci. 2025 May;34(5):e70122. doi: 10.1002/pro.70122. Protein Sci. 2025. PMID: 40248864

27

NKG2D ligand expression on NK cells induces NKG2D-mediated cross-tolerization of cytokine signaling and reduces NK cell tumor immunity.

Bedrosian ZK, Ruark EM, Sharma N, Silverstein RB, Manning A, Kohlsaat L, Markiewicz MA. Bedrosian ZK, et al. J Immunol. 2025 Jun 1;214(6):1410-1421. doi: 10.1093/jimmun/vkaf030. J Immunol. 2025. PMID: 40199610

28

Translational Implications of The Gut Microbiome in Women with A Benign or Malignant Pelvic Mass.

Sabu P, Pathak HB, Nissen E, Chalise P, Koestler DC, Godwin AK, Umar S, Spoozak L, Jewell A, Mahoney DE. Sabu P, et al. Ann Obstet Gynecol. 2025;8(1):1067. Epub 2025 Feb 12. Ann Obstet Gynecol. 2025. PMID: 40144639 Free PMC article.

29

Structural connectivity of the fore- and mid-brain in prairie voles.

Gossman KR, Andrews E, Dykstra B, Ta K, Ashourvan A, Smith AS. Gossman KR, et al. iScience. 2025 Feb 20;28(3):112065. doi: 10.1016/j.isci.2025.112065. eCollection 2025 Mar 21. iScience. 2025. PMID: 40144636 Free PMC article.

30

APOE4 Exerts Partial Diet-dependent Effects on Energy Expenditure and Skeletal Muscle Mitochondrial Pathways in a Preclinical Model.

Johnson CN, Lysaker CR, Gast EC, McCoin CS, Kemna RE, Fuller KNZ, Kugler BA, Franczak E, Csikos V, Allen J, John CS, Wolf MA, Morris ME, Thyfault JP, Wilkins HM, Geiger PC, Morris JK. Johnson CN, et al. Function (Oxf). 2025 Mar 24;6(2):zqaf017. doi: 10.1093/function/zqaf017. Function (Oxf). 2025. PMID: 40133005 Free PMC article.

31

Depletion of tumor-derived CXCL5 improves T cell infiltration and anti-PD-1 therapy response in an obese model of pancreatic cancer.

Walsh RM, Ambrose J, Jack JL, Eades AE, Bye BA, Tannus Ruckert M, Messaggio F, Olou AA, Chalise P, Pei D, VanSaun MN. Walsh RM, et al. J Immunother Cancer. 2025 Mar 22;13(3):e010057. doi: 10.1136/jitc-2024-010057. J Immunother Cancer. 2025. PMID: 40121029 Free PMC article.

32

Progesterone receptor-dependent downregulation of MHC class I promotes tumor immune evasion and growth in breast cancer.

Tinoco JC, Saunders HI, Werner LR, Sun X, Chowanec EI, Heard A, Chalise P, Vahrenkamp JM, Wilson AE, Liu CX, Lei G, Wei J, Cros H, Mohammed H, Troester M, Perou C, Markiewicz MA, Gertz J, Balko JM, Hartman ZC, Hagan CR. Tinoco JC, et al. J Immunother Cancer. 2025 Mar 18;13(3):e010179. doi: 10.1136/jitc-2024-010179. J Immunother Cancer. 2025. PMID: 40102028 Free PMC article.

33

Novel insights into palatal shelf elevation dynamics in normal mouse embryos.

Goering JP, Moedritzer M, Stetsiv M, Isai DG, Hufft-Martinez BM, Tran AJ, Umar Z, Rickabaugh MK, Keselman P, Chauhan M, Tran PV, Brooks WM, Fischer KJ, Czirok A, Saadi I. Goering JP, et al. Front Cell Dev Biol. 2025 Feb 11;13:1532448. doi: 10.3389/fcell.2025.1532448. eCollection 2025. Front Cell Dev Biol. 2025. PMID: 40008102 Free PMC article.

34

Dynamic changes in gene expression through aging in Drosophila melanogaster heads.

Hanson KM, Macdonald SJ. Hanson KM, et al. G3 (Bethesda). 2025 Apr 17;15(4):jkaf039. doi: 10.1093/g3journal/jkaf039. G3 (Bethesda). 2025. PMID: 39992875 Free PMC article.

35

Nested likelihood-ratio testing of the nonsynonymous:synonymous ratio suggests greater adaptation in the piRNA machinery of Drosophila melanogaster compared with Drosophila ananassae and Drosophila willistoni, two species with higher repeat content.

Blumenstiel JP, Kingan SB, Garrigan D, Hill T, Vedanayagam J. Blumenstiel JP, et al. G3 (Bethesda). 2025 Apr 17;15(4):jkaf017. doi: 10.1093/g3journal/jkaf017. G3 (Bethesda). 2025. PMID: 39982380 Free PMC article.

36

Quorum sensing regulation by the nitrogen phosphotransferase system in Pseudomonas aeruginosa.

Banerjee S, Smalley NE, Saenjamsai P, Fehr A, Dandekar AA, Cabeen MT, Chandler JR. Banerjee S, et al. bioRxiv [Preprint]. 2025 Feb 2:2025.02.01.636002. doi: 10.1101/2025.02.01.636002. bioRxiv. 2025. Update in: J Bacteriol. 2025 Aug 21;207(8):e0004825. doi: 10.1128/jb.00048-25. PMID: 39975224 Free PMC article. Updated. Preprint.

37

Extended amygdala corticotropin-releasing hormone neurons regulate sexually dimorphic changes in pair bond formation following social defeat in prairie voles (Microtus ochrogaster).

Tickerhoof MC, Nerio Morales LK, Goff J, Vitale EM, Smith AS. Tickerhoof MC, et al. Neuropsychopharmacology. 2025 May;50(6):965-975. doi: 10.1038/s41386-025-02067-6. Epub 2025 Feb 12. Neuropsychopharmacology. 2025. PMID: 39939823 Free article.

38

Wolbachia enhances the survival of Drosophila infected with fungal pathogens.

Perlmutter JI, Atadurdyyeva A, Schedl ME, Unckless RL. Perlmutter JI, et al. BMC Biol. 2025 Feb 11;23(1):42. doi: 10.1186/s12915-025-02130-0. BMC Biol. 2025. PMID: 39934832 Free PMC article.

39

Alzheimer-mutant γ-secretase complexes stall amyloid β-peptide production.

Arafi P, Devkota S, Williams E, Maesako M, Wolfe MS. Arafi P, et al. Elife. 2025 Feb 11;13:RP102274. doi: 10.7554/eLife.102274. Elife. 2025. PMID: 39932776 Free PMC article.

40

Dynamic changes in histone lysine lactylation during meiosis prophase I in mouse spermatogenesis.

Zhang X, Liu Y, Wang N. Zhang X, et al. Proc Natl Acad Sci U S A. 2025 Feb 18;122(7):e2418693122. doi: 10.1073/pnas.2418693122. Epub 2025 Feb 10. Proc Natl Acad Sci U S A. 2025. PMID: 39928879 Free PMC article.

41

PICH impacts the spindle assembly checkpoint via its DNA translocase and SUMO-interaction activities.

Lama B, Park H, Saraf A, Hassebroek V, Keifenheim D, Saito-Fujita T, Saitoh N, Aksenova V, Arnaoutov A, Dasso M, Clarke DJ, Azuma Y. Lama B, et al. Life Sci Alliance. 2025 Feb 7;8(4):e202403140. doi: 10.26508/lsa.202403140. Print 2025 Apr. Life Sci Alliance. 2025. PMID: 39919802 Free PMC article.

42

Notch3 deletion regulates HIV-1 gene expression and systemic inflammation to ameliorate chronic kidney disease.

Thornton M, Sommer N, McGonigle M, Kumar Ram A, Yerrathota S, Ehirim H, Chaturvedi A, Dinh Phan J, Chakraborty A, Chakravarthi VP, Gunewardena S, Tyagi M, Talreja J, Wang T, Singhal P, Tran PV, Fields TA, Ray PE, Dhillon NK, Sharma M. Thornton M, et al. Dis Model Mech. 2025 Feb 1;18(2):DMM052056. doi: 10.1242/dmm.052056. Epub 2025 Feb 25. Dis Model Mech. 2025. PMID: 39910908 Free PMC article.

43

A mouse model of immunosuppression facilitates oral Candida albicans biofilms, bacterial dysbiosis and dissemination of infection.

Veerapandian R, Paudyal A, Schneider SM, Lee STM, Vediyappan G. Veerapandian R, et al. Front Cell Infect Microbiol. 2025 Jan 20;14:1467896. doi: 10.3389/fcimb.2024.1467896. eCollection 2024. Front Cell Infect Microbiol. 2025. PMID: 39902181 Free PMC article.

44

Overexpression of Drosophila NUAK or Constitutively-Active Formin-Like Promotes the Formation of Aberrant Myofibrils.

Tiwari P, Brooks D, Geisbrecht ER. Tiwari P, et al. Cytoskeleton (Hoboken). 2025 Oct;82(10):643-652. doi: 10.1002/cm.21999. Epub 2025 Jan 29. Cytoskeleton (Hoboken). 2025. PMID: 39876757

45

Bubble Trouble: Epithelial Extracellular Vesicles and Their microRNA Mischief in Chronic Obstructive Pulmonary Disease.

Sundar IK. Sundar IK. Am J Respir Cell Mol Biol. 2025 Aug;73(2):157-158. doi: 10.1165/rcmb.2024-0583ED. Am J Respir Cell Mol Biol. 2025. PMID: 39847712 Free PMC article. No abstract available.

46

Short- and long-range roles of UNC-6/Netrin in dorsal-ventral axon guidance in vivo in Caenorhabditis elegans.

Hooper KM, Jain VD, Gormly CJ, Sanderson BJ, Lundquist EA. Hooper KM, et al. PLoS Genet. 2025 Jan 17;21(1):e1011526. doi: 10.1371/journal.pgen.1011526. eCollection 2025 Jan. PLoS Genet. 2025. PMID: 39823521 Free PMC article.

47

IFN-γ signaling is required for the efficient replication of murine hepatitis virus (MHV) strain JHM in the brains of infected mice.

Kerr CM, Proctor-Roser MA, Parthasarathy S, O'Connor JJ, Pfannenstiel JJ, Orozco RC, Fehr AR. Kerr CM, et al. bioRxiv [Preprint]. 2025 Jan 2:2025.01.01.631031. doi: 10.1101/2025.01.01.631031. bioRxiv. 2025. Update in: PLoS One. 2025 Jun 5;20(6):e0317482. doi: 10.1371/journal.pone.0317482. PMID: 39803452 Free PMC article. Updated. Preprint.

48

Dynamic Changes in Gene Expression Through Aging in Drosophila melanogaster Heads.

Hanson KM, Macdonald SJ. Hanson KM, et al. bioRxiv [Preprint]. 2024 Dec 20:2024.12.11.627977. doi: 10.1101/2024.12.11.627977. bioRxiv. 2024. Update in: G3 (Bethesda). 2025 Apr 17;15(4):jkaf039. doi: 10.1093/g3journal/jkaf039. PMID: 39764034 Free PMC article. Updated. Preprint.

49

Lactylation of tau in human Alzheimer's disease brains.

Zhang X, Liu Y, Rekowski MJ, Wang N. Zhang X, et al. Alzheimers Dement. 2025 Feb;21(2):e14481. doi: 10.1002/alz.14481. Epub 2024 Dec 30. Alzheimers Dement. 2025. PMID: 39740133 Free PMC article.

50

Complete genome sequence of Bacillus subtilis bacteriophage Adastra.

Herbig AF, Pendergrass EM. Herbig AF, et al. Microbiol Resour Announc. 2025 Feb 11;14(2):e0094224. doi: 10.1128/mra.00942-24. Epub 2024 Dec 23. Microbiol Resour Announc. 2025. PMID: 39714142 Free PMC article.

51

Diaci v3.0: chromosome-level assembly, de novo transcriptome, and manual annotation of Diaphorina citri, insect vector of Huanglongbing.

Shippy TD, Hosmani PS, Flores-Gonzalez M, Mann M, Miller S, Weirauch MT, Vosberg C, Massimino C, Tank W, de Oliveira L, Chen C, Hoyt S, Adams R, Adkins S, Bailey ST, Chen X, Davis N, DeLaFlor Y, Espino M, Gervais K, Grace R, Harper D, Hasan DL, Hoang M, Holcomb R, Jernigan MR, Kemp M, Kennedy B, Kercher K, Klaessan S, Kruse A, Licata S, Lu A, Masse R, Mathew A, Michels S, Michels E, Neiman A, Norman S, Norus J, Ortiz Y, Panitz N, Paris T, Perentesis KMR, Perry M, Reynolds M, Sena MM, Tamayo B, Thate A, Vandervoort S, Ventura J, Weis N, Wise T, Shatters RG Jr, Heck M, Benoit JB, Hunter WB, Mueller LA, Brown SJ, D'Elia T, Saha S. Shippy TD, et al. Gigascience. 2024 Jan 2;13:giae109. doi: 10.1093/gigascience/giae109. Gigascience. 2024. PMID: 39704701 Free PMC article.

52

Cutaneous human papillomavirus E6 impairs the cGAS-STING pathway.

Tolbert E, Dacus D, Pollina R, Wallace NA. Tolbert E, et al. bioRxiv [Preprint]. 2024 Dec 5:2024.11.29.625575. doi: 10.1101/2024.11.29.625575. bioRxiv. 2024. PMID: 39677810 Free PMC article. Preprint.

53

PhoU homologs from Staphylococcus aureus dimerization and protein interactions.

Matthews CT, Mahmud S, Gardner SG. Matthews CT, et al. Microbiol Spectr. 2025 Jan 7;13(1):e0206724. doi: 10.1128/spectrum.02067-24. Epub 2024 Dec 11. Microbiol Spectr. 2025. PMID: 39660905 Free PMC article.

54

TFAP2C is a key regulator of intrauterine trophoblast cell invasion and deep hemochorial placentation.

Dominguez EM, Moreno-Irusta A, Scott RL, Iqbal K, Soares MJ. Dominguez EM, et al. JCI Insight. 2024 Dec 3;10(2):e186471. doi: 10.1172/jci.insight.186471. JCI Insight. 2024. PMID: 39625795 Free PMC article.

55

Methylation cytometric pretreatment blood immune profiles with tumor mutation burden as prognostic indicators for survival outcomes in head and neck cancer patients on anti-PD-1 therapy.

Zhang Z, Sehgal K, Shirai K, Butler RA, Wiencke JK, Koestler DC, Ramush G, Lee MK, Molinaro AM, Stolrow HG, Birnbaum A, Salas LA, Haddad RI, Kelsey KT, Christensen BC. Zhang Z, et al. NPJ Precis Oncol. 2024 Nov 18;8(1):267. doi: 10.1038/s41698-024-00759-8. NPJ Precis Oncol. 2024. PMID: 39558036 Free PMC article.

56

Reduced Liver Mitochondrial Energy Metabolism Impairs Food Intake Regulation Following Gastric Preloads and Fasting.

Ponte ME, Prom JC, Newcomb MA, Jordan AB, Comfort LL, Hu J, Puchalska P, Geisler CE, Hayes MR, Morris EM. Ponte ME, et al. bioRxiv [Preprint]. 2025 Jan 23:2024.10.24.620086. doi: 10.1101/2024.10.24.620086. bioRxiv. 2025. Update in: Mol Metab. 2025 Jul;97:102167. doi: 10.1016/j.molmet.2025.102167. PMID: 39554188 Free PMC article. Updated. Preprint.

57

Salicylic acid priming before cadmium exposure increases wheat growth but does not uniformly reverse cadmium effects on membrane glycerolipids.

Colak N, Kurt-Celebi A, Roth MR, Welti R, Torun H, Ayaz FA. Colak N, et al. Plant Biol (Stuttg). 2025 Jan;27(1):79-91. doi: 10.1111/plb.13736. Epub 2024 Nov 14. Plant Biol (Stuttg). 2025. PMID: 39541134 Free PMC article.

58

Targeted engineering of camelina and pennycress seeds for ultrahigh accumulation of acetyl-TAG.

Alkotami L, White DJ, Schuler KM, Esfahanian M, Jarvis BA, Paulson AE, Koley S, Kang J, Lu C, Allen DK, Lee YJ, Sedbrook JC, Durrett TP. Alkotami L, et al. Proc Natl Acad Sci U S A. 2024 Nov 19;121(47):e2412542121. doi: 10.1073/pnas.2412542121. Epub 2024 Nov 11. Proc Natl Acad Sci U S A. 2024. PMID: 39527733 Free PMC article.

59

Opportunities to advance cervical cancer prevention and care.

Brooke G, Wendel S, Banerjee A, Wallace N. Brooke G, et al. Tumour Virus Res. 2024 Dec;18:200292. doi: 10.1016/j.tvr.2024.200292. Epub 2024 Oct 25. Tumour Virus Res. 2024. PMID: 39490532 Free PMC article. Review.

60

Cadmium-induced lung injury disrupts immune cell homeostasis in the secondary lymphoid organs in mice.

Prasad C, Dasgupta D, Tripathi A, Steele N, Pyaram K, Sundar IK. Prasad C, et al. Toxicology. 2024 Dec;509:153971. doi: 10.1016/j.tox.2024.153971. Epub 2024 Oct 11. Toxicology. 2024. PMID: 39396604 Free PMC article.

61

New advances in understanding inhibition of myeloperoxidase and neutrophil serine proteases by two families of staphylococcal innate immune evasion proteins.

Herdendorf TJ, Mishra N, Fatehi S, Gido CD, Prakash O, Geisbrecht BV. Herdendorf TJ, et al. Arch Biochem Biophys. 2024 Nov;761:110177. doi: 10.1016/j.abb.2024.110177. Epub 2024 Oct 9. Arch Biochem Biophys. 2024. PMID: 39393662 Free PMC article. Review.

62

Mutation of a highly conserved isoleucine residue in loop 2 of several β-coronavirus macrodomains indicates that enhanced ADP-ribose binding is detrimental for replication.

Kerr CM, Pfannenstiel JJ, Alhammad YM, O'Connor JJ, Ghimire R, Shrestha R, Khattabi R, Saenjamsai P, Parthasarathy S, McDonald PR, Gao P, Johnson DK, More S, Roy A, Channappanavar R, Fehr AR. Kerr CM, et al. J Virol. 2024 Nov 19;98(11):e0131324. doi: 10.1128/jvi.01313-24. Epub 2024 Oct 10. J Virol. 2024. PMID: 39387584 Free PMC article.

63

Acute exposure to mercury drives changes in gene expression in Drosophila melanogaster.

Sanderson BJ, Sims-West DJ, Macdonald SJ. Sanderson BJ, et al. BMC Res Notes. 2024 Sep 30;17(1):279. doi: 10.1186/s13104-024-06945-y. BMC Res Notes. 2024. PMID: 39350189 Free PMC article.

64

Dynamic Membrane Lipid Changes in Physcomitrium patens Reveal Developmental and Environmental Adaptations.

Gautam D, Behera JR, Shinde S, Pattada SD, Roth M, Yao L, Welti R, Kilaru A. Gautam D, et al. Biology (Basel). 2024 Sep 16;13(9):726. doi: 10.3390/biology13090726. Biology (Basel). 2024. PMID: 39336153 Free PMC article.

65

NOTUM-mediated WNT silencing drives extravillous trophoblast cell lineage development.

Shukla V, Moreno-Irusta A, Varberg KM, Kuna M, Iqbal K, Galligos AM, Aplin JD, Choudhury RH, Okae H, Arima T, Soares MJ. Shukla V, et al. Proc Natl Acad Sci U S A. 2024 Oct;121(40):e2403003121. doi: 10.1073/pnas.2403003121. Epub 2024 Sep 26. Proc Natl Acad Sci U S A. 2024. PMID: 39325428 Free PMC article.

66

Visual feedback and motor memory contributions to sustained motor control deficits in autism spectrum disorder across childhood and into adulthood.

Shafer RL, Bartolotti J, Driggers A, Bojanek E, Wang Z, Mosconi MW. Shafer RL, et al. Res Sq [Preprint]. 2024 Sep 4:rs.3.rs-4831158. doi: 10.21203/rs.3.rs-4831158/v1. Res Sq. 2024. Update in: J Neurodev Disord. 2025 May 16;17(1):26. doi: 10.1186/s11689-025-09607-7. PMID: 39281871 Free PMC article. Updated. Preprint.

67

Alzheimer-mutant γ-secretase complexes stall amyloid β-peptide production.

Arafi P, Devkota S, Williams E, Maesako M, Wolfe MS. Arafi P, et al. bioRxiv [Preprint]. 2024 Nov 18:2024.08.30.610520. doi: 10.1101/2024.08.30.610520. bioRxiv. 2024. Update in: Elife. 2025 Feb 11;13:RP102274. doi: 10.7554/eLife.102274. PMID: 39257787 Free PMC article. Updated. Preprint.

68

Aryl Hydrocarbon Receptor Activation Drives 2-Methoxy Estradiol Secretion in Human Trophoblast Stem Cell Development.

Shukla V, Iqbal K, Okae H, Arima T, Soares MJ. Shukla V, et al. bioRxiv [Preprint]. 2025 Jan 31:2024.08.27.609205. doi: 10.1101/2024.08.27.609205. bioRxiv. 2025. PMID: 39253430 Free PMC article. Preprint.

69

Bacteria can anticipate the seasons: Photoperiodism in cyanobacteria.

Jabbur ML, Bratton BP, Johnson CH. Jabbur ML, et al. Science. 2024 Sep 6;385(6713):1105-1111. doi: 10.1126/science.ado8588. Epub 2024 Sep 5. Science. 2024. PMID: 39236161 Free PMC article.

70

Integrated structural model of the palladin-actin complex using XL-MS, docking, NMR, and SAXS.

Sargent R, Liu DH, Yadav R, Glennenmeier D, Bradford C, Urbina N, Beck MR. Sargent R, et al. bioRxiv [Preprint]. 2024 Aug 25:2024.08.25.609580. doi: 10.1101/2024.08.25.609580. bioRxiv. 2024. Update in: Protein Sci. 2025 May;34(5):e70122. doi: 10.1002/pro.70122. PMID: 39229147 Free PMC article. Updated. Preprint.

71

Unraveling Protein-Metabolite Interactions in Precision Nutrition: A Case Study of Blueberry-Derived Metabolites Using Advanced Computational Methods.

Bhandari D, Adepu KK, Anishkin A, Kay CD, Young EE, Baumbauer KM, Ghosh A, Chintapalli SV. Bhandari D, et al. Metabolites. 2024 Aug 3;14(8):430. doi: 10.3390/metabo14080430. Metabolites. 2024. PMID: 39195526 Free PMC article.

72

Estimation and inference on the partial volume under the receiver operating characteristic surface.

Young KJ, Bantis LE. Young KJ, et al. Stat Methods Med Res. 2024 Sep;33(9):1577-1594. doi: 10.1177/09622802241267356. Epub 2024 Aug 8. Stat Methods Med Res. 2024. PMID: 39118330 Free PMC article.

73

An assessment of compositional methods for the analysis of DNA methylation-based deconvolution estimates.

Alsup A, Nissen E, Salas LA, Molinaro AM, Reiner A, Liu S, Madsen TE, Liu L, Auer PL, Christensen BC, Wiencke JK, Kelsey KT, Koestler DC. Alsup A, et al. Epigenomics. 2024;16(15-16):1067-1080. doi: 10.1080/17501911.2024.2379242. Epub 2024 Aug 2. Epigenomics. 2024. PMID: 39093129 Free PMC article.

74

A Single Trophoblast Layer Acts as the Gatekeeper at the Endothelial-Hematopoietic Crossroad in the Placenta.

Home P, Ghosh A, Kumar RP, Ray S, Gunewardena S, Kumar R, Dasgupta P, Roy N, Saha A, Ouseph MM, Leone GW, Paul S. Home P, et al. bioRxiv [Preprint]. 2024 Jul 16:2024.07.12.603303. doi: 10.1101/2024.07.12.603303. bioRxiv. 2024. PMID: 39071312 Free PMC article. Preprint.

75

Plasma-Derived Extracellular Vesicles and Non-Extracellular Vesicle Components from APC^Min/+ Mice Promote Pro-Tumorigenic Activities and Activate Human Colonic Fibroblasts via the NF-κB Signaling Pathway.

Arteaga-Blanco LA, Evans AE, Dixon DA. Arteaga-Blanco LA, et al. Cells. 2024 Jul 15;13(14):1195. doi: 10.3390/cells13141195. Cells. 2024. PMID: 39056778 Free PMC article.

76

Characterization of natural product inhibitors of quorum sensing reveals competitive inhibition of Pseudomonas aeruginosa RhlR by ortho-vanillin.

Woods KE, Akhter S, Rodriguez B, Townsend KA, Smith N, Smith B, Wambua A, Craddock V, Abisado-Duque RG, Santa EE, Manson DE, Oakley BR, Hancock LE, Miao Y, Blackwell HE, Chandler JR. Woods KE, et al. Microbiol Spectr. 2024 Sep 3;12(9):e0068124. doi: 10.1128/spectrum.00681-24. Epub 2024 Jul 24. Microbiol Spectr. 2024. PMID: 39046261 Free PMC article.

77

Adolescent treadmill exercise enhances hippocampal brain-derived neurotrophic factor (BDNF) expression and improves cognition in autism-modeled rats.

King C, Rogers LG, Jansen J, Sivayokan B, Neyhard J, Warnes E, Hall SE, Plakke B. King C, et al. Physiol Behav. 2024 Oct 1;284:114638. doi: 10.1016/j.physbeh.2024.114638. Epub 2024 Jul 14. Physiol Behav. 2024. PMID: 39004196 Free PMC article.

78

Aerobic exercise improves cognitive flexibility and modulates regional volume changes in a rat model of autism.

Sivayokan B, King C, Mali I, Payne M, Strating H, Warnes E, Bossmann SH, Plakke B. Sivayokan B, et al. Behav Brain Res. 2024 Aug 5;471:115136. doi: 10.1016/j.bbr.2024.115136. Epub 2024 Jul 4. Behav Brain Res. 2024. PMID: 38971431 Free PMC article.

79

Arabidopsis PROTODERMAL FACTOR2 binds lysophosphatidylcholines and transcriptionally regulates phospholipid metabolism.

Wojciechowska I, Mukherjee T, Knox-Brown P, Hu X, Khosla A, Subedi B, Ahmad B, Mathews GL, Panagakis AA, Thompson KA, Peery ST, Szlachetko J, Thalhammer A, Hincha DK, Skirycz A, Schrick K. Wojciechowska I, et al. New Phytol. 2024 Nov;244(4):1498-1518. doi: 10.1111/nph.19917. Epub 2024 Jul 1. New Phytol. 2024. PMID: 38952028 Free PMC article.

80

Use of phosphotyrosine-containing peptides to target SH2 domains: Antagonist peptides of the Crk/CrkL-p130Cas axis.

Douglas JT, Johnson DK, Roy A, Park T. Douglas JT, et al. Methods Enzymol. 2024;698:301-342. doi: 10.1016/bs.mie.2024.04.013. Epub 2024 Apr 27. Methods Enzymol. 2024. PMID: 38886037 Free PMC article.

81

Staphylococcal peroxidase inhibitor (SPIN): Investigation of the inhibitory N-terminal domain via a stabilizing disulfide insertion.

Fatehi S, Mishra N, Herdendorf TJ, Prakash O, Geisbrecht BV. Fatehi S, et al. Arch Biochem Biophys. 2024 Aug;758:110060. doi: 10.1016/j.abb.2024.110060. Epub 2024 Jun 14. Arch Biochem Biophys. 2024. PMID: 38880318 Free PMC article.

82

Intrinsic aerobic capacity modulates Alzheimer's disease pathological hallmarks, brain mitochondrial function and proteome during aging.

Kugler BA, Lysaker CR, Franczak E, Hauger BM, Csikos V, Stopperan JA, Allen JA, Stanford JA, Koch LG, Britton SL, Thyfault JP, Wilkins HM. Kugler BA, et al. Geroscience. 2024 Oct;46(5):4955-4967. doi: 10.1007/s11357-024-01248-3. Epub 2024 Jun 13. Geroscience. 2024. PMID: 38867031 Free PMC article.

83

Bacteria can anticipate the seasons: photoperiodism in cyanobacteria.

Jabbur ML, Johnson CH. Jabbur ML, et al. bioRxiv [Preprint]. 2024 Aug 8:2024.05.13.593996. doi: 10.1101/2024.05.13.593996. bioRxiv. 2024. Update in: Science. 2024 Sep 6;385(6713):1105-1111. doi: 10.1126/science.ado8588. PMID: 38798677 Free PMC article. Updated. Preprint.

84

SRC-1 controls growth cone polarity and protrusion with the UNC-6/Netrin receptor UNC-5 in Caenorhabditis elegans.

Mahadik SS, Burt EK, Lundquist EA. Mahadik SS, et al. PLoS One. 2024 May 21;19(5):e0295701. doi: 10.1371/journal.pone.0295701. eCollection 2024. PLoS One. 2024. PMID: 38771761 Free PMC article.

85

Identification of Arginine-Vasopressin Receptor 1a (Avpr1a/Avpr1a) as a Novel Candidate Gene for Chronic Visceral Pain Sheds Light on the Potential Role of Enteric Neurons in the Development of Visceral Hypersensitivity.

Kader L, Willits AB, Meriano S, Christianson JA, La JH, Feng B, Knight B, Kosova G, Deberry JJ, Coates MD, Hyams JS, Baumbauer KM, Young EE. Kader L, et al. J Pain. 2024 Sep;25(9):104572. doi: 10.1016/j.jpain.2024.104572. Epub 2024 May 18. J Pain. 2024. PMID: 38768798 Free PMC article.

86

Short- and long-range roles of UNC-6/Netrin in dorsal-ventral axon guidance in vivo in Caenorhabditis elegans.

Hooper KM, Lundquist EA. Hooper KM, et al. bioRxiv [Preprint]. 2024 Apr 23:2024.04.23.590737. doi: 10.1101/2024.04.23.590737. bioRxiv. 2024. Update in: PLoS Genet. 2025 Jan 17;21(1):e1011526. doi: 10.1371/journal.pgen.1011526. PMID: 38712249 Free PMC article. Updated. Preprint.

87

MAB-5/Hox regulates the Q neuroblast transcriptome, including cwn-1/Wnt, to mediate posterior migration in Caenorhabditis elegans.

Paolillo VK, Ochs ME, Lundquist EA. Paolillo VK, et al. Genetics. 2024 Jun 5;227(2):iyae045. doi: 10.1093/genetics/iyae045. Genetics. 2024. PMID: 38652773 Free PMC article.

88

Spinal cord injury-induced neurogenic bowel: A role for host-microbiome interactions in bowel pain and dysfunction.

Willits AB, Kader L, Eller O, Roberts E, Bye B, Strope T, Freudenthal BD, Umar S, Chintapalli S, Shankar K, Pei D, Christianson J, Baumbauer KM, Young EE. Willits AB, et al. Neurobiol Pain. 2024 Apr 6;15:100156. doi: 10.1016/j.ynpai.2024.100156. eCollection 2024 Jan-Jun. Neurobiol Pain. 2024. PMID: 38601267 Free PMC article.

89

Characterization of natural product inhibitors of quorum sensing in Pseudomonas aeruginosa reveals competitive inhibition of RhlR by ortho-vanillin.

Woods KE, Akhter S, Rodriguez B, Townsend KA, Smith N, Smith B, Wambua A, Craddock V, Abisado-Duque RG, Santa EE, Manson DE, Oakley BR, Hancock LE, Miao Y, Blackwell HE, Chandler JR. Woods KE, et al. bioRxiv [Preprint]. 2024 Mar 13:2024.02.24.581676. doi: 10.1101/2024.02.24.581676. bioRxiv. 2024. Update in: Microbiol Spectr. 2024 Sep 3;12(9):e0068124. doi: 10.1128/spectrum.00681-24. PMID: 38559250 Free PMC article. Updated. Preprint.

90

Germ-free status but not subacute polychlorinated biphenyl (PCB) exposure altered hepatic phosphatidylcholine and ether-phosphatidylcholine levels in mice.

Li X, Wang H, Wang H, Bullert AJ, Cui JY, Wang K, Lehmler HJ. Li X, et al. Toxicology. 2024 May;504:153790. doi: 10.1016/j.tox.2024.153790. Epub 2024 Mar 27. Toxicology. 2024. PMID: 38552894 Free PMC article.

91

Per- and Polyfluoroalkyl Substances: Impacts on Morphology, Behavior and Lipid Levels in Zebrafish Embryos.

Albers J, Mylroie J, Kimble A, Steward C, Chapman K, Wilbanks M, Perkins E, Garcia-Reyero N. Albers J, et al. Toxics. 2024 Feb 29;12(3):192. doi: 10.3390/toxics12030192. Toxics. 2024. PMID: 38535925 Free PMC article.

92

The MAB-5/Hox family transcription factor is important for Caenorhabditis elegans innate immune response to Staphylococcus epidermidis infection.

Kywe C, Lundquist EA, Ackley BD, Lansdon P. Kywe C, et al. G3 (Bethesda). 2024 May 7;14(5):jkae054. doi: 10.1093/g3journal/jkae054. G3 (Bethesda). 2024. PMID: 38478633 Free PMC article.

93

Tracing the STING exocytosis pathway during herpes viruses infection.

Dogrammatzis C, Saud R, Waisner H, Lasnier S, Suma SM, Grieshaber B, Kalamvoki M. Dogrammatzis C, et al. mBio. 2024 Apr 10;15(4):e0037324. doi: 10.1128/mbio.00373-24. Epub 2024 Mar 12. mBio. 2024. PMID: 38470056 Free PMC article.

94

A single amino acid polymorphism in natural Metchnikowin alleles of Drosophila results in systemic immunity and life history tradeoffs.

Perlmutter JI, Chapman JR, Wilkinson MC, Nevarez-Saenz I, Unckless RL. Perlmutter JI, et al. PLoS Genet. 2024 Mar 11;20(3):e1011155. doi: 10.1371/journal.pgen.1011155. eCollection 2024 Mar. PLoS Genet. 2024. PMID: 38466751 Free PMC article.

95

Isolation and genomic characterization of Staphylococcus aureus bacteriophages from Chennai, India.

Deepak SJ, Kannan P, Savariraj WR, S A, Ayyasamy E, Tuticorin Maragatham Alagesan SK, Ravindran NB, Sundaram S, Mohanadasse NQ, Shippy TD, Cull CA, Levent G, Amachawadi RG. Deepak SJ, et al. Microbiol Resour Announc. 2024 Apr 11;13(4):e0120923. doi: 10.1128/mra.01209-23. Epub 2024 Mar 8. Microbiol Resour Announc. 2024. PMID: 38456698 Free PMC article.

96

Combining multiple biomarkers linearly to minimize the Euclidean distance of the closest point on the receiver operating characteristic surface to the perfection corner in trichotomous settings.

Mosier BR, Bantis LE. Mosier BR, et al. Stat Methods Med Res. 2024 Apr;33(4):647-668. doi: 10.1177/09622802241233768. Epub 2024 Mar 6. Stat Methods Med Res. 2024. PMID: 38445348 Free PMC article.

97

Collective cell migration relies on PPP1R15-mediated regulation of the endoplasmic reticulum stress response.

Chen Y, McDonald JA. Chen Y, et al. Curr Biol. 2024 Apr 8;34(7):1390-1402.e4. doi: 10.1016/j.cub.2024.02.014. Epub 2024 Feb 29. Curr Biol. 2024. PMID: 38428416 Free PMC article.

98

Deficiencies in cluster-2 ALA lipid flippases result in salicylic acid-dependent growth reductions.

Davis JA, Poulsen LR, Kjeldgaard B, Moog MW, Brown E, Palmgren M, López-Marqués RL, Harper JF. Davis JA, et al. Physiol Plant. 2024 Mar-Apr;176(2):e14228. doi: 10.1111/ppl.14228. Physiol Plant. 2024. PMID: 38413387 Free PMC article.

99

Proteasome condensate formation is driven by multivalent interactions with shuttle factors and ubiquitin chains.

Waite KA, Vontz G, Lee SY, Roelofs J. Waite KA, et al. Proc Natl Acad Sci U S A. 2024 Mar 5;121(10):e2310756121. doi: 10.1073/pnas.2310756121. Epub 2024 Feb 26. Proc Natl Acad Sci U S A. 2024. PMID: 38408252 Free PMC article.

100

NOTUM-MEDIATED WNT SILENCING DRIVES EXTRAVILLOUS TROPHOBLAST CELL LINEAGE DEVELOPMENT.

Shukla V, Moreno-Irusta A, Varberg KM, Kuna M, Iqbal K, Galligos AM, Aplin JD, Choudhury RH, Okae H, Arima T, Soares MJ. Shukla V, et al. bioRxiv [Preprint]. 2024 Aug 22:2024.02.13.579974. doi: 10.1101/2024.02.13.579974. bioRxiv. 2024. Update in: Proc Natl Acad Sci U S A. 2024 Oct;121(40):e2403003121. doi: 10.1073/pnas.2403003121. PMID: 38405745 Free PMC article. Updated. Preprint.

101

2-Cys peroxiredoxins contribute to thylakoid lipid unsaturation by affecting ω-3 fatty acid desaturase 8.

Hernández ML, Jiménez-López J, Cejudo FJ, Pérez-Ruiz JM. Hernández ML, et al. Plant Physiol. 2024 May 31;195(2):1521-1535. doi: 10.1093/plphys/kiae102. Plant Physiol. 2024. PMID: 38386701 Free PMC article.

102

Induction of Meiotic Initiation in Long-Term Mouse Spermatogonial Stem Cells Under Retinoid Acid and Nutrient Restriction Conditions.

Zhang X, Wang N. Zhang X, et al. Methods Mol Biol. 2024;2770:113-121. doi: 10.1007/978-1-0716-3698-5_9. Methods Mol Biol. 2024. PMID: 38351450 Free PMC article.

103

Missing Nuts and Bolts: Translating Pulmonary Fibrosis from Preclinical Murine Models to Human Clinical Trials.

Sundar IK, Matson SM. Sundar IK, et al. Lung. 2024 Apr;202(2):221-222. doi: 10.1007/s00408-024-00676-4. Epub 2024 Feb 7. Lung. 2024. PMID: 38326503 Free PMC article. No abstract available.

104

Loss of Adaptive DNA Breaks in Alzheimer's Disease Brains.

Zhang X, Haeri M, Swerdlow RH, Wang N. Zhang X, et al. J Alzheimers Dis. 2024;97(4):1861-1875. doi: 10.3233/JAD-231303. J Alzheimers Dis. 2024. PMID: 38306051 Free PMC article.

105

Gene expression variation underlying tissue-specific responses to copper stress in Drosophila melanogaster.

Everman ER, Macdonald SJ. Everman ER, et al. G3 (Bethesda). 2024 Mar 6;14(3):jkae015. doi: 10.1093/g3journal/jkae015. G3 (Bethesda). 2024. PMID: 38262701 Free PMC article.

106

Mutation of a highly conserved isoleucine residue in loop 2 of several β-coronavirus macrodomains indicates that enhanced ADP-ribose binding is detrimental to infection.

Kerr CM, Pfannenstiel JJ, Alhammad YM, O'Connor JJ, Ghimire R, Shrestha R, Khattabi R, Saenjamsai P, Parthasarathy S, McDonald PR, Gao P, Johnson DK, More S, Roy A, Channappanavar R, Fehr AR. Kerr CM, et al. bioRxiv [Preprint]. 2024 Jul 12:2024.01.03.574082. doi: 10.1101/2024.01.03.574082. bioRxiv. 2024. Update in: J Virol. 2024 Nov 19;98(11):e0131324. doi: 10.1128/jvi.01313-24. PMID: 38260573 Free PMC article. Updated. Preprint.

107

Active avoidance recruits the anterior cingulate cortex regardless of social context in male and female rats.

Ruble S, Kramer C, West L, Payne K, Ness H, Erickson G, Scott A, Diehl MM. Ruble S, et al. Res Sq [Preprint]. 2024 Jun 7:rs.3.rs-3750422. doi: 10.21203/rs.3.rs-3750422/v2. Res Sq. 2024. Update in: Neurobiol Stress. 2024 Dec 05;34:100702. doi: 10.1016/j.ynstr.2024.100702. PMID: 38260416 Free PMC article. Updated. Preprint.

108

Nasopharyngeal Bacterial Prevalence and Microbial Diversity at First Treatment for Bovine Respiratory Disease (BRD) and Its Associations with Health and Mortality Outcomes in Feedyard Cattle.

Neal K, Amachawadi RG, White BJ, Shippy TD, Theurer ME, Larson RL, Lubbers BV, Kleinhenz M. Neal K, et al. Microorganisms. 2023 Dec 24;12(1):33. doi: 10.3390/microorganisms12010033. Microorganisms. 2023. PMID: 38257861 Free PMC article.

109

Enrichment of a neutrophil-like monocyte transcriptional state in glioblastoma myeloid suppressor cells.

Wiencke JK, Nissen E, Koestler DC, Tamaki SJ, Tamaki CM, Hansen HM, Warrier G, Hadad S, McCoy L, Rice T, Clarke J, Taylor JW, Salas LA, Christensen BC, Kelsey KT, Butler R, Molinaro AM. Wiencke JK, et al. Res Sq [Preprint]. 2023 Dec 28:rs.3.rs-3793353. doi: 10.21203/rs.3.rs-3793353/v1. Res Sq. 2023. PMID: 38234734 Free PMC article. Preprint.

110

Biodistribution Analysis of Peptide-Coated Magnetic Iron Nanoparticles: A Simple and Quantitative Method.

Natarajan P, Horak K, Rowe J, Yoon S, Lingo J, Tomich JM, Fleming SD. Natarajan P, et al. Mol Pharm. 2024 Feb 5;21(2):970-981. doi: 10.1021/acs.molpharmaceut.3c01080. Epub 2024 Jan 11. Mol Pharm. 2024. PMID: 38206824 Free PMC article.

111

PerSEveML: A Web-Based Tool to Identify Persistent Biomarker Structure for Rare Events Using Integrative Machine Learning Approach.

Dutta S, Mudaranthakam DP, Li Y, Sardiu ME. Dutta S, et al. bioRxiv [Preprint]. 2023 Oct 30:2023.10.25.564000. doi: 10.1101/2023.10.25.564000. bioRxiv. 2023. Update in: Mol Omics. 2024 Jun 10;20(5):348-358. doi: 10.1039/d4mo00008k. PMID: 38196661 Free PMC article. Updated. Preprint.

112

Identification of arginine-vasopressin receptor 1a (Avpr1a/AVPR1A) as a novel candidate gene for chronic visceral pain.

Kader L, Willits A, Meriano S, Christianson JA, La JH, Feng B, Knight B, Kosova G, Deberry J, Coates M, Hyams J, Baumbauer K, Young EE. Kader L, et al. bioRxiv [Preprint]. 2023 Dec 19:2023.12.19.572390. doi: 10.1101/2023.12.19.572390. bioRxiv. 2023. Update in: J Pain. 2024 Sep;25(9):104572. doi: 10.1016/j.jpain.2024.104572. PMID: 38187732 Free PMC article. Updated. Preprint.

113

Loss of Adaptive DNA Breaks in Alzheimer's Disease Brains.

Zhang X, Haeri M, Swerdlow RH, Wang N. Zhang X, et al. bioRxiv [Preprint]. 2023 Dec 12:2023.12.11.566423. doi: 10.1101/2023.12.11.566423. bioRxiv. 2023. Update in: J Alzheimers Dis. 2024;97(4):1861-1875. doi: 10.3233/JAD-231303. PMID: 38168316 Free PMC article. Updated. Preprint.

114

Lipid modulation contributes to heat stress adaptation in peanut.

Spivey WW, Rustgi S, Welti R, Roth MR, Burow MD, Bridges WC Jr, Narayanan S. Spivey WW, et al. Front Plant Sci. 2023 Dec 18;14:1299371. doi: 10.3389/fpls.2023.1299371. eCollection 2023. Front Plant Sci. 2023. PMID: 38164249 Free PMC article.

115

Extracellular vesicle microRNA signatures as novel biomarkers in obese asthmatics.

Sundar IK, Prasad C, Duraisamy SK. Sundar IK, et al. Allergy. 2024 May;79(5):1398-1400. doi: 10.1111/all.15979. Epub 2023 Dec 21. Allergy. 2024. PMID: 38126596 Free PMC article. No abstract available.

116

Conditionally mutant animal model for investigating the invasive trophoblast cell lineage.

Iqbal K, Dominguez EM, Nixon B, Moreno-Irusta A, Crnkovich B, Scott RL, Vu HTH, Tuteja G, Vivian JL, Soares MJ. Iqbal K, et al. Development. 2024 Jan 15;151(2):dev202239. doi: 10.1242/dev.202239. Epub 2024 Jan 17. Development. 2024. PMID: 38112206 Free PMC article.

117

TAF7L regulates early stages of male germ cell development in the rat.

Moreno-Irusta A, Dominguez EM, Iqbal K, Zhang X, Wang N, Soares MJ. Moreno-Irusta A, et al. FASEB J. 2024 Jan;38(1):e23376. doi: 10.1096/fj.202301716RR. FASEB J. 2024. PMID: 38112167 Free PMC article.

118

ATP-gated potassium channels contribute to ketogenic diet-mediated analgesia in mice.

Enders JD, Thomas S, Lynch P, Jack J, Ryals JM, Puchalska P, Crawford P, Wright DE. Enders JD, et al. Neurobiol Pain. 2023 Jul 3;14:100138. doi: 10.1016/j.ynpai.2023.100138. eCollection 2023 Aug-Dec. Neurobiol Pain. 2023. PMID: 38099277 Free PMC article.

119

Lipidomic Analysis Reveals Differences in the Extent of Remyelination in the Brain and Spinal Cord.

De Silva Mohotti N, Kobayashi H, Williams JM, Binjawadagi R, Evertsen MP, Christ EG, Hartley MD. De Silva Mohotti N, et al. J Proteome Res. 2024 Aug 2;23(8):2830-2844. doi: 10.1021/acs.jproteome.3c00443. Epub 2023 Nov 29. J Proteome Res. 2024. PMID: 38018851 Free PMC article.

120

The potential of PCNA inhibition as a therapeutic strategy in cervical cancer.

Wendel SO, Snow JA, Gu L, Banerjee NS, Malkas L, Wallace NA. Wendel SO, et al. J Med Virol. 2023 Nov;95(11):e29244. doi: 10.1002/jmv.29244. J Med Virol. 2023. PMID: 38010649 Free PMC article. Review.

121

Maintenance and Evaluation of Wolbachia Male-Killers of Dipterans.

Schedl ME, Nguyen NH, Unckless RL, Perlmutter JI. Schedl ME, et al. Methods Mol Biol. 2024;2739:29-53. doi: 10.1007/978-1-0716-3553-7_3. Methods Mol Biol. 2024. PMID: 38006544 Free PMC article.

122

Endophenotype trait domains for advancing gene discovery in autism spectrum disorder.

Mosconi MW, Stevens CJ, Unruh KE, Shafer R, Elison JT. Mosconi MW, et al. J Neurodev Disord. 2023 Nov 22;15(1):41. doi: 10.1186/s11689-023-09511-y. J Neurodev Disord. 2023. PMID: 37993779 Free PMC article. Review.

123

Antibody-directed evolution reveals a mechanism for enhanced neutralization at the HIV-1 fusion peptide site.

Banach BB, Pletnev S, Olia AS, Xu K, Zhang B, Rawi R, Bylund T, Doria-Rose NA, Nguyen TD, Fahad AS, Lee M, Lin BC, Liu T, Louder MK, Madan B, McKee K, O'Dell S, Sastry M, Schön A, Bui N, Shen CH, Wolfe JR, Chuang GY, Mascola JR, Kwong PD, DeKosky BJ. Banach BB, et al. Nat Commun. 2023 Nov 21;14(1):7593. doi: 10.1038/s41467-023-42098-5. Nat Commun. 2023. PMID: 37989731 Free PMC article.

124

MAB-5/Hox regulates the Q neuroblast transcriptome, including cwn-1/Wnt, to mediate posterior migration in Caenorhabditis elegans.

Paolillo VK, Ochs ME, Lundquist EA. Paolillo VK, et al. bioRxiv [Preprint]. 2023 Nov 11:2023.11.09.566461. doi: 10.1101/2023.11.09.566461. bioRxiv. 2023. Update in: Genetics. 2024 Jun 5;227(2):iyae045. doi: 10.1093/genetics/iyae045. PMID: 37986999 Free PMC article. Updated. Preprint.

125

Nuclear localization of HD-Zip IV transcription factor GLABRA2 is driven by Importin α.

Ahmad B, Lerma-Reyes R, Mukherjee T, Nguyen HV, Weber AL, Schulze WX, Comer JR, Schrick K. Ahmad B, et al. bioRxiv [Preprint]. 2023 Nov 5:2023.11.03.565550. doi: 10.1101/2023.11.03.565550. bioRxiv. 2023. Update in: J Exp Bot. 2024 Oct 30;75(20):6441-6461. doi: 10.1093/jxb/erae326. PMID: 37961624 Free PMC article. Updated. Preprint.

126

Distinct ClC-6 and ClC-7 Cl^- sensitivities provide insight into ClC-7's role in lysosomal Cl^- homeostasis.

Coppola MA, Gavazzo P, Zanardi I, Tettey-Matey A, Liantonio A, Fong P, Pusch M. Coppola MA, et al. J Physiol. 2023 Dec;601(24):5635-5653. doi: 10.1113/JP285431. Epub 2023 Nov 8. J Physiol. 2023. PMID: 37937509 Free PMC article.

127

Palladium-Catalyzed Dearomatization of Benzothiophenes: Isolation and Functionalization of a Discrete Dearomatized Intermediate.

Intelli AJ, Pal M, Selvaraju M, Altman RA. Intelli AJ, et al. Synthesis (Stuttg). 2023 Nov;55(21):3568-3574. doi: 10.1055/a-2092-9012. Epub 2023 Jun 13. Synthesis (Stuttg). 2023. PMID: 37915377 Free PMC article.

128

Limitation of amino acid availability by bacterial populations during enhanced colitis in IBD mouse model.

Richie TG, Heeren L, Kamke A, Monk K, Pogranichniy S, Summers T, Wiechman H, Ran Q, Sarkar S, Plattner BL, Lee STM. Richie TG, et al. mSystems. 2023 Dec 21;8(6):e0070323. doi: 10.1128/msystems.00703-23. Epub 2023 Nov 1. mSystems. 2023. PMID: 37909786 Free PMC article.

129

TAF7L REGULATES EARLY STAGES OF MALE GERM CELL DEVELOPMENT.

Moreno-Irusta A, Dominguez EM, Iqbal K, Zhang X, Wang N, Soares MJ. Moreno-Irusta A, et al. bioRxiv [Preprint]. 2023 Oct 10:2023.10.08.561408. doi: 10.1101/2023.10.08.561408. bioRxiv. 2023. Update in: FASEB J. 2024 Jan;38(1):e23376. doi: 10.1096/fj.202301716RR. PMID: 37873461 Free PMC article. Updated. Preprint.

130

Wolbachia enhances the survival of Drosophila infected with fungal pathogens.

Perlmutter JI, Atadurdyyeva A, Schedl ME, Unckless RL. Perlmutter JI, et al. bioRxiv [Preprint]. 2023 Oct 11:2023.09.30.560320. doi: 10.1101/2023.09.30.560320. bioRxiv. 2023. Update in: BMC Biol. 2025 Feb 11;23(1):42. doi: 10.1186/s12915-025-02130-0. PMID: 37873081 Free PMC article. Updated. Preprint.

131

Interactions among human papillomavirus proteins and host DNA repair factors differ during the viral life cycle and virus-induced tumorigenesis.

Wendel S, Wallace NA. Wendel S, et al. mSphere. 2023 Dec 20;8(6):e0042723. doi: 10.1128/msphere.00427-23. Epub 2023 Oct 18. mSphere. 2023. PMID: 37850786 Free PMC article. Review.

132

optima: an open-source R package for the Tapestri platform for integrative single cell multiomics data analysis.

Pei D, Griffard R, Yellapu NK, Nissen E, Koestler DC. Pei D, et al. Bioinformatics. 2023 Oct 3;39(10):btad611. doi: 10.1093/bioinformatics/btad611. Bioinformatics. 2023. PMID: 37796801 Free PMC article.

133

Hepatocyte-specific deletion of small heterodimer partner protects mice against acetaminophen-induced hepatotoxicity via activation of Nrf2.

Ghosh P, Magee N, Akakpo JY, Ahamed F, Eppler N, Jones E, Yu Y, He L, Lebofsky M, Dai H, Jaeschke H, Ding WX, Zhang Y. Ghosh P, et al. Toxicol Sci. 2023 Dec 21;197(1):53-68. doi: 10.1093/toxsci/kfad104. Toxicol Sci. 2023. PMID: 37792503 Free PMC article.

134

Acute HDM exposure shows time-of-day and sex-based differences in the severity of lung inflammation and circadian clock disruption.

Srinivasan A, Giri A, Duraisamy SK, Alsup A, Castro M, Sundar IK. Srinivasan A, et al. J Allergy Clin Immunol Glob. 2023 Jul 24;2(4):100155. doi: 10.1016/j.jacig.2023.100155. eCollection 2023 Nov. J Allergy Clin Immunol Glob. 2023. PMID: 37781650 Free PMC article.

135

Evolutionary Engineering a Larger Porin Using a Loop-to-Hairpin Mechanism.

Dhar R, Bowman AM, Hatungimana B, Sg Slusky J. Dhar R, et al. J Mol Biol. 2023 Nov 15;435(22):168292. doi: 10.1016/j.jmb.2023.168292. Epub 2023 Sep 26. J Mol Biol. 2023. PMID: 37769963 Free PMC article.

136

Notch3 deletion regulates HIV-1 gene expression and systemic inflammation to ameliorate chronic kidney disease.

Thornton M, Sommer N, McGonigle M, Ram AK, Yerrathota S, Ehirim H, Chaturvedi A, Phan JD, Chakraborty A, Chakravarthi PV, Gunewardena S, Tyagi M, Talreja J, Wang T, Singhal P, Tran PV, Fields TA, Ray PE, Dhillon NK, Sharma M. Thornton M, et al. bioRxiv [Preprint]. 2024 Jun 25:2023.09.12.557484. doi: 10.1101/2023.09.12.557484. bioRxiv. 2024. Update in: Dis Model Mech. 2025 Feb 01;18(2):DMM052056. doi: 10.1242/dmm.052056. PMID: 37745500 Free PMC article. Updated. Preprint.

137

Peroxide-Initiated Hydrophosphinylation of gem-Difluoroalkenes.

Intelli AJ, Lee RT, Altman RA. Intelli AJ, et al. J Org Chem. 2023 Oct 6;88(19):14012-14021. doi: 10.1021/acs.joc.3c01562. Epub 2023 Sep 22. J Org Chem. 2023. PMID: 37738112 Free PMC article.

138

No end in sight: Mysteries of the telomeric variation in plants.

Kumawat S, Choi JY. Kumawat S, et al. Am J Bot. 2023 Nov;110(11):e16244. doi: 10.1002/ajb2.16244. Epub 2023 Nov 1. Am J Bot. 2023. PMID: 37733763 Free PMC article. No abstract available.

139

De novo design of a stapled peptide targeting SARS-CoV-2 spike protein receptor-binding domain.

Thakkar R, Agarwal DK, Ranaweera CB, Ishiguro S, Conda-Sheridan M, Gaudreault NN, Richt JA, Tamura M, Comer J. Thakkar R, et al. RSC Med Chem. 2023 Jul 31;14(9):1722-1733. doi: 10.1039/d3md00222e. eCollection 2023 Sep 19. RSC Med Chem. 2023. PMID: 37731704 Free PMC article.

140

Alternatives to Styrene- and Diisobutylene-Based Copolymers for Membrane Protein Solubilization via Nanodisc Formation.

Workman CE, Bag P, Cawthon B, Ali FH, Brady NG, Bruce BD, Long BK. Workman CE, et al. Angew Chem Int Ed Engl. 2023 Oct 23;62(43):e202306572. doi: 10.1002/anie.202306572. Epub 2023 Sep 19. Angew Chem Int Ed Engl. 2023. PMID: 37682083 Free PMC article.

141

Inhibition of p300 increases cytotoxicity of cisplatin in pancreatic cancer cells.

Bugbee T, Gathoni M, Payne C, Blubaugh M, Matlock K, Wixson T, Lu A, Stancic S, Chung PA, Palinski R, Wallace N. Bugbee T, et al. Gene. 2023 Dec 20;888:147762. doi: 10.1016/j.gene.2023.147762. Epub 2023 Sep 2. Gene. 2023. PMID: 37666373 Free PMC article.

142

Chronic HDM exposure shows time-of-day and sex-based differences in inflammatory response associated with lung circadian clock disruption.

Srinivasan A, Giri A, Duraisamy SK, Alsup A, Castro M, Sundar IK. Srinivasan A, et al. iScience. 2023 Aug 9;26(9):107580. doi: 10.1016/j.isci.2023.107580. eCollection 2023 Sep 15. iScience. 2023. PMID: 37664635 Free PMC article.

143

A short isoform of the UNC-6/Netrin receptor UNC-5 is required for growth cone polarity and robust growth cone protrusion in Caenorhabditis elegans.

Mahadik SS, Lundquist EA. Mahadik SS, et al. Front Cell Dev Biol. 2023 Aug 15;11:1240994. doi: 10.3389/fcell.2023.1240994. eCollection 2023. Front Cell Dev Biol. 2023. PMID: 37649551 Free PMC article.

144

Euglena gracilis Extract Protects From Tobacco Smoke Carcinogen-Induced Lung Cancer by Altering Gut Microbiota Metabolome.

Upreti D, Ishiguro S, Phillips M, Nakashima A, Suzuki K, Comer J, Tamura M. Upreti D, et al. Integr Cancer Ther. 2023 Jan-Dec;22:15347354231195323. doi: 10.1177/15347354231195323. Integr Cancer Ther. 2023. PMID: 37646331 Free PMC article.

145

Polycystic kidneys: interaction of notch and renin.

Daniel EA, Sommer NA, Sharma M. Daniel EA, et al. Clin Sci (Lond). 2023 Aug 14;137(15):1145-1150. doi: 10.1042/CS20230023. Clin Sci (Lond). 2023. PMID: 37553961 Free PMC article.

146

Sample size reestimation and Bayesian predictive probability for single-arm clinical trials with a time-to-event endpoint using Weibull distribution with unknown shape parameter.

Waleed M, He J, Phadnis MA. Waleed M, et al. J Biopharm Stat. 2024 Jul 3;34(4):469-487. doi: 10.1080/10543406.2023.2234998. Epub 2023 Aug 6. J Biopharm Stat. 2024. PMID: 37545144

147

Homoleptic complexes of isocyano- and diisocyanobiazulenes with a 12-electron, ligand-based redox capacity.

Connelly PT, Applegate JC, Maldonado DA, Okeowo MK, Henke WC, Oliver AG, Berrie CL, Barybin MV. Connelly PT, et al. Dalton Trans. 2023 Aug 22;52(33):11419-11426. doi: 10.1039/d3dt01958f. Dalton Trans. 2023. PMID: 37538026 Free PMC article.

148

Gene expression variation underlying tissue-specific responses to copper stress in Drosophila melanogaster.

Everman ER, Macdonald SJ. Everman ER, et al. bioRxiv [Preprint]. 2023 Jul 18:2023.07.12.548746. doi: 10.1101/2023.07.12.548746. bioRxiv. 2023. Update in: G3 (Bethesda). 2024 Mar 6;14(3):jkae015. doi: 10.1093/g3journal/jkae015. PMID: 37503205 Free PMC article. Updated. Preprint.

149

Improving the accuracy and internal consistency of regression-based clustering of high-dimensional datasets.

Zhang B, He J, Hu J, Chalise P, Koestler DC. Zhang B, et al. Stat Appl Genet Mol Biol. 2023 Jul 25;22(1):10.1515/sagmb-2022-0031. doi: 10.1515/sagmb-2022-0031. eCollection 2023 Jan 1. Stat Appl Genet Mol Biol. 2023. PMID: 37489035 Free PMC article.

150

HD-Zip IV transcription factors: Drivers of epidermal cell fate integrate metabolic signals.

Schrick K, Ahmad B, Nguyen HV. Schrick K, et al. Curr Opin Plant Biol. 2023 Oct;75:102417. doi: 10.1016/j.pbi.2023.102417. Epub 2023 Jul 11. Curr Opin Plant Biol. 2023. PMID: 37441837 Free PMC article. Review.

151

General features of transmembrane beta barrels from a large database.

Montezano D, Bernstein R, Copeland MM, Slusky JSG. Montezano D, et al. Proc Natl Acad Sci U S A. 2023 Jul 18;120(29):e2220762120. doi: 10.1073/pnas.2220762120. Epub 2023 Jul 11. Proc Natl Acad Sci U S A. 2023. PMID: 37432995 Free PMC article.

152

Protocol for neonatal respiratory syncytial virus infection in mice and immune analysis of infected lungs and bronchoalveolar lavage fluid.

Adhikari S, Baral P. Adhikari S, et al. STAR Protoc. 2023 Sep 15;4(3):102434. doi: 10.1016/j.xpro.2023.102434. Epub 2023 Jul 9. STAR Protoc. 2023. PMID: 37432860 Free PMC article.

153

Transcriptional metabolic reprogramming implements meiotic fate decision in mouse testicular germ cells.

Zhang X, Liu Y, Sosa F, Gunewardena S, Crawford PA, Zielen AC, Orwig KE, Wang N. Zhang X, et al. Cell Rep. 2023 Jul 25;42(7):112749. doi: 10.1016/j.celrep.2023.112749. Epub 2023 Jul 4. Cell Rep. 2023. PMID: 37405912 Free PMC article.

154

Hierarchical deconvolution for extensive cell type resolution in the human brain using DNA methylation.

Zhang Z, Wiencke JK, Kelsey KT, Koestler DC, Molinaro AM, Pike SC, Karra P, Christensen BC, Salas LA. Zhang Z, et al. Front Neurosci. 2023 Jun 19;17:1198243. doi: 10.3389/fnins.2023.1198243. eCollection 2023. Front Neurosci. 2023. PMID: 37404460 Free PMC article.

155

Evolutionary engineering a larger porin using a loop-to-hairpin mechanism.

Dhar R, Bowman AM, Hatungimana B, Slusky JS. Dhar R, et al. bioRxiv [Preprint]. 2023 Sep 20:2023.06.14.544993. doi: 10.1101/2023.06.14.544993. bioRxiv. 2023. Update in: J Mol Biol. 2023 Nov 15;435(22):168292. doi: 10.1016/j.jmb.2023.168292. PMID: 37398247 Free PMC article. Updated. Preprint.

156

The 2.4 Å structure of Zymomonas mobilis pyruvate kinase: Implications for stability and regulation.

Meneely KM, McFarlane JS, Wright CL, Vela K, Swint-Kruse L, Fenton AW, Lamb AL. Meneely KM, et al. Arch Biochem Biophys. 2023 Aug;744:109679. doi: 10.1016/j.abb.2023.109679. Epub 2023 Jun 30. Arch Biochem Biophys. 2023. PMID: 37393983 Free PMC article.

157

Effector-mediated subversion of proteasome activator (PA)28αβ enhances host defense against Legionella pneumophila under inflammatory and oxidative stress conditions.

Ngwaga T, Chauhan D, Salberg AG, Shames SR. Ngwaga T, et al. PLoS Pathog. 2023 Jun 22;19(6):e1011473. doi: 10.1371/journal.ppat.1011473. eCollection 2023 Jun. PLoS Pathog. 2023. PMID: 37347796 Free PMC article.

158

SPECC1L: a cytoskeletal protein that regulates embryonic tissue dynamics.

Saadi I, Goering JP, Hufft-Martinez BM, Tran PV. Saadi I, et al. Biochem Soc Trans. 2023 Jun 28;51(3):949-958. doi: 10.1042/BST20220461. Biochem Soc Trans. 2023. PMID: 37345651 Free PMC article.

159

Calculating detection limits and uncertainty of reference-based deconvolution of whole-blood DNA methylation data.

Bell-Glenn S, Salas LA, Molinaro AM, Butler RA, Christensen BC, Kelsey KT, Wiencke JK, Koestler DC. Bell-Glenn S, et al. Epigenomics. 2023 Apr;15(7):435-451. doi: 10.2217/epi-2023-0006. Epub 2023 Jun 20. Epigenomics. 2023. PMID: 37337720 Free PMC article.

160

Landscape of Double-Stranded DNA Breaks in Postmortem Brains from Alzheimer's Disease and Non-Demented Individuals.

Zhang X, Liu Y, Huang M, Gunewardena S, Haeri M, Swerdlow RH, Wang N. Zhang X, et al. J Alzheimers Dis. 2023;94(2):519-535. doi: 10.3233/JAD-230316. J Alzheimers Dis. 2023. PMID: 37334609 Free PMC article.

161

ATP-Gated Potassium Channels Contribute to Ketogenic Diet-Mediated Analgesia in Mice.

Enders JD, Thomas S, Lynch P, Jack J, Ryals JM, Puchalska P, Crawford P, Wright DE. Enders JD, et al. bioRxiv [Preprint]. 2023 May 24:2023.05.22.541799. doi: 10.1101/2023.05.22.541799. bioRxiv. 2023. PMID: 37292762 Free PMC article. Updated. Preprint.

162

SRC-1 controls growth cone polarity and protrusion with the UNC-6/Netrin receptor UNC-5 in Caenorhabditis elegans.

Mahadik SS, Burt EK, Lundquist EA. Mahadik SS, et al. bioRxiv [Preprint]. 2023 May 20:2023.05.20.541322. doi: 10.1101/2023.05.20.541322. bioRxiv. 2023. Update in: PLoS One. 2024 May 21;19(5):e0295701. doi: 10.1371/journal.pone.0295701. PMID: 37292733 Free PMC article. Updated. Preprint.

163

Simultaneous inhibition of two neutrophil serine proteases by the S. aureus innate immune evasion protein EapH2.

Mishra N, Herdendorf TJ, Prakash O, Geisbrecht BV. Mishra N, et al. J Biol Chem. 2023 Jul;299(7):104878. doi: 10.1016/j.jbc.2023.104878. Epub 2023 Jun 1. J Biol Chem. 2023. PMID: 37269950 Free PMC article.

164

Rev-erbα agonists suppresses TGFβ1-induced fibroblast-to-myofibroblast transition and pro-fibrotic phenotype in human lung fibroblasts.

Prasad C, Hahn K, Duraisamy SK, Salathe MA, Huang SK, Burris TP, Sundar IK. Prasad C, et al. Biochem Biophys Res Commun. 2023 Aug 20;669:120-127. doi: 10.1016/j.bbrc.2023.05.092. Epub 2023 May 24. Biochem Biophys Res Commun. 2023. PMID: 37269594 Free PMC article.

165

A short isoform of the UNC-6/Netrin receptor UNC-5 is required for growth cone polarity and robust growth cone protrusion in Caenorhabditis elegans.

Mahadik SS, Lundquist EA. Mahadik SS, et al. bioRxiv [Preprint]. 2023 May 3:2023.05.02.539117. doi: 10.1101/2023.05.02.539117. bioRxiv. 2023. Update in: Front Cell Dev Biol. 2023 Aug 15;11:1240994. doi: 10.3389/fcell.2023.1240994. PMID: 37205526 Free PMC article. Updated. Preprint.

166

Cell activation-based screening of natively paired human T cell receptor repertoires.

Fahad AS, Chung CY, López Acevedo SN, Boyle N, Madan B, Gutiérrez-González MF, Matus-Nicodemos R, Laflin AD, Ladi RR, Zhou J, Wolfe J, Llewellyn-Lacey S, Koup RA, Douek DC, Balfour HH Jr, Price DA, DeKosky BJ. Fahad AS, et al. Sci Rep. 2023 May 17;13(1):8011. doi: 10.1038/s41598-023-31858-4. Sci Rep. 2023. PMID: 37198258 Free PMC article.

167

An Amino Acid Substitution in Elongation Factor EF-G1A Alters the Antibiotic Susceptibility of Pseudomonas aeruginosa LasR-Null Mutants.

Abisado-Duque RG, Townsend KA, Mckee BM, Woods K, Koirala P, Holder AJ, Craddock VD, Cabeen M, Chandler JR. Abisado-Duque RG, et al. J Bacteriol. 2023 Jun 27;205(6):e0011423. doi: 10.1128/jb.00114-23. Epub 2023 May 16. J Bacteriol. 2023. PMID: 37191503 Free PMC article.

168

Genetic variation in chromatin state across multiple tissues in Drosophila melanogaster.

Huynh K, Smith BR, Macdonald SJ, Long AD. Huynh K, et al. PLoS Genet. 2023 May 5;19(5):e1010439. doi: 10.1371/journal.pgen.1010439. eCollection 2023 May. PLoS Genet. 2023. PMID: 37146087 Free PMC article.

169

Computational design of a cyclic peptide that inhibits the CTLA4 immune checkpoint.

Thakkar R, Upreti D, Ishiguro S, Tamura M, Comer J. Thakkar R, et al. RSC Med Chem. 2023 Mar 1;14(4):658-670. doi: 10.1039/d2md00409g. eCollection 2023 Apr 26. RSC Med Chem. 2023. PMID: 37122540 Free PMC article.

170

Assessment of immune cell profiles among post-menopausal women in the Women's Health Initiative using DNA methylation-based methods.

Nissen E, Reiner A, Liu S, Wallace RB, Molinaro AM, Salas LA, Christensen BC, Wiencke JK, Koestler DC, Kelsey KT. Nissen E, et al. Clin Epigenetics. 2023 Apr 28;15(1):69. doi: 10.1186/s13148-023-01488-8. Clin Epigenetics. 2023. PMID: 37118842 Free PMC article.

171

Experimental Study: Deep Learning-Based Fall Monitoring among Older Adults with Skin-Wearable Electronics.

Lee Y, Pokharel S, Muslim AA, Kc DB, Lee KH, Yeo WH. Lee Y, et al. Sensors (Basel). 2023 Apr 14;23(8):3983. doi: 10.3390/s23083983. Sensors (Basel). 2023. PMID: 37112326 Free PMC article.

172

Ketolysis is required for the proper development and function of the somatosensory nervous system.

Enders J, Jack J, Thomas S, Lynch P, Lasnier S, Cao X, Swanson MT, Ryals JM, Thyfault JP, Puchalska P, Crawford PA, Wright DE. Enders J, et al. Exp Neurol. 2023 Jul;365:114428. doi: 10.1016/j.expneurol.2023.114428. Epub 2023 Apr 24. Exp Neurol. 2023. PMID: 37100111 Free PMC article.

173

Beyond Antioxidation: Keap1-Nrf2 in the Development and Effector Functions of Adaptive Immune Cells.

Pant A, Dasgupta D, Tripathi A, Pyaram K. Pant A, et al. Immunohorizons. 2023 Apr 1;7(4):288-298. doi: 10.4049/immunohorizons.2200061. Immunohorizons. 2023. PMID: 37099275 Free PMC article. Review.

174

The genetic basis of adaptation to copper pollution in Drosophila melanogaster.

Everman ER, Macdonald SJ, Kelly JK. Everman ER, et al. Front Genet. 2023 Apr 4;14:1144221. doi: 10.3389/fgene.2023.1144221. eCollection 2023. Front Genet. 2023. PMID: 37082199 Free PMC article.

175

Dietary tryptophan metabolite released by intratumoral Lactobacillus reuteri facilitates immune checkpoint inhibitor treatment.

Bender MJ, McPherson AC, Phelps CM, Pandey SP, Laughlin CR, Shapira JH, Medina Sanchez L, Rana M, Richie TG, Mims TS, Gocher-Demske AM, Cervantes-Barragan L, Mullett SJ, Gelhaus SL, Bruno TC, Cannon N, McCulloch JA, Vignali DAA, Hinterleitner R, Joglekar AV, Pierre JF, Lee STM, Davar D, Zarour HM, Meisel M. Bender MJ, et al. Cell. 2023 Apr 27;186(9):1846-1862.e26. doi: 10.1016/j.cell.2023.03.011. Epub 2023 Apr 6. Cell. 2023. PMID: 37028428 Free PMC article.

176

Functional comparison of full-length palladin to isolated actin binding domain.

Albraiki S, Ajiboye O, Sargent R, Beck MR. Albraiki S, et al. Protein Sci. 2023 May;32(5):e4638. doi: 10.1002/pro.4638. Protein Sci. 2023. PMID: 37027210 Free PMC article.

177

TOM-1/tomosyn acts with the UNC-6/netrin receptor UNC-5 to inhibit growth cone protrusion in Caenorhabditis elegans.

Mahadik SS, Lundquist EA. Mahadik SS, et al. Development. 2023 Apr 1;150(7):dev201031. doi: 10.1242/dev.201031. Epub 2023 Apr 4. Development. 2023. PMID: 37014062 Free PMC article.

178

MAHOMES II: A webserver for predicting if a metal binding site is enzymatic.

Feehan R, Copeland M, Franklin MW, Slusky JSG. Feehan R, et al. bioRxiv [Preprint]. 2023 Mar 12:2023.03.08.531790. doi: 10.1101/2023.03.08.531790. bioRxiv. 2023. Update in: Protein Sci. 2023 Apr;32(4):e4626. doi: 10.1002/pro.4626. PMID: 36945603 Free PMC article. Updated. Preprint.

179

MAHOMES II: A webserver for predicting if a metal binding site is enzymatic.

Feehan R, Copeland M, Franklin MW, Slusky JSG. Feehan R, et al. Protein Sci. 2023 Apr;32(4):e4626. doi: 10.1002/pro.4626. Protein Sci. 2023. PMID: 36916762 Free PMC article.

180

Opioid induces increased DNA damage in prefrontal cortex and nucleus accumbens.

Wang Y, Singh A, Li G, Yue S, Hertel K, Wang ZJ. Wang Y, et al. Pharmacol Biochem Behav. 2023 Mar;224:173535. doi: 10.1016/j.pbb.2023.173535. Epub 2023 Mar 11. Pharmacol Biochem Behav. 2023. PMID: 36907467 Free PMC article.

181

Biological insights from multi-omics analysis strategies: Complex pleotropic effects associated with autophagy.

Ding G, Mugume Y, Dueñas ME, Lee YJ, Liu M, Nettleton DS, Zhao X, Li L, Bassham DC, Nikolau BJ. Ding G, et al. Front Plant Sci. 2023 Feb 16;14:1093358. doi: 10.3389/fpls.2023.1093358. eCollection 2023. Front Plant Sci. 2023. PMID: 36875559 Free PMC article.

182

Hepatic transcriptome profiling reveals early signatures associated with disease transition from non-alcoholic steatosis to steatohepatitis.

Magee N, Ahamed F, Eppler N, Jones E, Ghosh P, He L, Zhang Y. Magee N, et al. Liver Res. 2022 Dec;6(4):238-250. doi: 10.1016/j.livres.2022.11.001. Epub 2022 Nov 22. Liver Res. 2022. PMID: 36864891 Free PMC article.

183

Identifying dynamical persistent biomarker structures for rare events using modern integrative machine learning approach.

Dutta S, Box AC, Li Y, Sardiu ME. Dutta S, et al. Proteomics. 2023 Nov;23(21-22):e2200290. doi: 10.1002/pmic.202200290. Epub 2023 Mar 10. Proteomics. 2023. PMID: 36852539 Free PMC article.

184

Manual curation and phylogenetic analysis of chitinase family genes in the Asian citrus psyllid, Diaphorina citri.

Shippy TD, Miller S, Tamayo B, Hosmani PS, Flores-Gonzalez M, Mueller LA, Hunter WB, Brown SJ, D'Elia T, Saha S. Shippy TD, et al. GigaByte. 2022 Mar 17;2022:gigabyte46. doi: 10.46471/gigabyte.46. eCollection 2022. GigaByte. 2022. PMID: 36824529 Free PMC article.

185

Genomic identification, annotation, and comparative analysis of Vacuolar-type ATP synthase subunits in Diaphorina citri.

Grace R, Massimino C, Shippy TD, Tank W, Hosmani PS, Flores-Gonzalez M, Mueller LA, Hunter WB, Benoit JB, Brown SJ, D'Elia T, Saha S. Grace R, et al. GigaByte. 2022 Feb 9;2022:gigabyte39. doi: 10.46471/gigabyte.39. eCollection 2022. GigaByte. 2022. PMID: 36824519 Free PMC article.

186

Annotation of Hox cluster and Hox cofactor genes in the Asian citrus psyllid, Diaphorina citri, reveals novel features.

Shippy TD, Hosmani PS, Flores-Gonzalez M, Mueller LA, Hunter WB, Brown SJ, D'Elia T, Saha S. Shippy TD, et al. GigaByte. 2022 Apr 8;2022:gigabyte49. doi: 10.46471/gigabyte.49. eCollection 2022. GigaByte. 2022. PMID: 36824511 Free PMC article.

187

Off-target piRNA gene silencing in Drosophila melanogaster rescued by a transposable element insertion.

Miller DE, Dorador AP, Van Vaerenberghe K, Li A, Grantham EK, Cerbin S, Cummings C, Barragan M, Egidy RR, Scott AR, Hall KE, Perera A, Gilliland WD, Hawley RS, Blumenstiel JP. Miller DE, et al. PLoS Genet. 2023 Feb 21;19(2):e1010598. doi: 10.1371/journal.pgen.1010598. eCollection 2023 Feb. PLoS Genet. 2023. PMID: 36809339 Free PMC article.

188

Abnormal Intraepidermal Nerve Fiber Density in Disease: A Scoping Review.

Thomas SJ, Enders J, Kaiser A, Rovenstine L, Heslop L, Hauser W, Chadwick A, Wright DE. Thomas SJ, et al. medRxiv [Preprint]. 2023 Feb 8:2023.02.08.23285644. doi: 10.1101/2023.02.08.23285644. medRxiv. 2023. Update in: Front Neurol. 2023 Apr 20;14:1161077. doi: 10.3389/fneur.2023.1161077. PMID: 36798392 Free PMC article. Updated. Preprint.

189

Hyper-palatable foods in elementary school lunches: Availability and contributing factors in a national sample of US public schools.

Dilsaver D, Rohde K, Chollet-Hinton L, Fazzino TL. Dilsaver D, et al. PLoS One. 2023 Feb 16;18(2):e0281448. doi: 10.1371/journal.pone.0281448. eCollection 2023. PLoS One. 2023. PMID: 36795642 Free PMC article.

190

Cross-species activation of hydrogen cyanide production by a promiscuous quorum-sensing receptor promotes Chromobacterium subtsugae competition in a dual-species model.

Loo C, Koirala P, Smith NC, Evans KC, Benomar S, Parisi IR, Oller A, Chandler JR. Loo C, et al. Microbiology (Reading). 2023 Feb;169(2):001294. doi: 10.1099/mic.0.001294. Microbiology (Reading). 2023. PMID: 36790401 Free PMC article.

191

Detergent headgroups control TolC folding in vitro.

Ikujuni AP, Budiardjo SJ, Dhar R, Slusky JSG. Ikujuni AP, et al. Biophys J. 2023 Apr 4;122(7):1185-1197. doi: 10.1016/j.bpj.2023.02.007. Epub 2023 Feb 10. Biophys J. 2023. PMID: 36772796 Free PMC article.

192

A single amino acid polymorphism in natural Metchnikowin alleles of Drosophila results in systemic immunity and life history tradeoffs.

Perlmutter JI, Chapman JR, Wilkinson MC, Nevarez-Saenz I, Unckless RL. Perlmutter JI, et al. bioRxiv [Preprint]. 2023 Jan 19:2023.01.16.524277. doi: 10.1101/2023.01.16.524277. bioRxiv. 2023. Update in: PLoS Genet. 2024 Mar 11;20(3):e1011155. doi: 10.1371/journal.pgen.1011155. PMID: 36712113 Free PMC article. Updated. Preprint.

193

Ketolysis is Required for the Proper Development and Function of the Somatosensory Nervous System.

Enders J, Jack J, Thomas S, Lynch P, Lasnier S, Cao X, Swanson MT, Ryals JM, Thyfault JP, Puchalska P, Crawford PA, Wright DE. Enders J, et al. bioRxiv [Preprint]. 2023 Mar 30:2023.01.11.523492. doi: 10.1101/2023.01.11.523492. bioRxiv. 2023. Update in: Exp Neurol. 2023 Jul;365:114428. doi: 10.1016/j.expneurol.2023.114428. PMID: 36711538 Free PMC article. Updated. Preprint.

194

High-fat/high-sucrose diet worsens metabolic outcomes and widespread hypersensitivity following early-life stress exposure in female mice.

Frick JM, Eller OC, Foright RM, Levasseur BM, Yang X, Wang R, Winter MK, O'Neil MF, Morris EM, Thyfault JP, Christianson JA. Frick JM, et al. Am J Physiol Regul Integr Comp Physiol. 2023 Mar 1;324(3):R353-R367. doi: 10.1152/ajpregu.00216.2022. Epub 2023 Jan 24. Am J Physiol Regul Integr Comp Physiol. 2023. PMID: 36693166 Free PMC article.

195

Tunable Magneto-Plasmonic Nanosensor for Sensitive Detection of Foodborne Pathogens.

Banerjee T, Panchal N, Sutton C, Elliott R, Patel T, Kajal K, Arogunyo E, Koti N, Santra S. Banerjee T, et al. Biosensors (Basel). 2023 Jan 7;13(1):109. doi: 10.3390/bios13010109. Biosensors (Basel). 2023. PMID: 36671944 Free PMC article.

196

CITED2 is a conserved regulator of the uterine-placental interface.

Kuna M, Dhakal P, Iqbal K, Dominguez EM, Kent LN, Muto M, Moreno-Irusta A, Kozai K, Varberg KM, Okae H, Arima T, Sucov HM, Soares MJ. Kuna M, et al. Proc Natl Acad Sci U S A. 2023 Jan 17;120(3):e2213622120. doi: 10.1073/pnas.2213622120. Epub 2023 Jan 10. Proc Natl Acad Sci U S A. 2023. PMID: 36626551 Free PMC article.

197

The AKT1-FOXO4 axis reciprocally regulates hemochorial placentation.

Kozai K, Moreno-Irusta A, Iqbal K, Winchester ML, Scott RL, Simon ME, Muto M, Parrish MR, Soares MJ. Kozai K, et al. Development. 2023 Jan 15;150(2):dev201095. doi: 10.1242/dev.201095. Epub 2023 Jan 17. Development. 2023. PMID: 36607602 Free PMC article.

198

Caspase-1 and the inflammasome promote polycystic kidney disease progression.

Swenson-Fields KI, Ward CJ, Lopez ME, Fross S, Heimes Dillon AL, Meisenheimer JD, Rabbani AJ, Wedlock E, Basu MK, Jansson KP, Rowe PS, Stubbs JR, Wallace DP, Vitek MP, Fields TA. Swenson-Fields KI, et al. Front Mol Biosci. 2022 Nov 29;9:971219. doi: 10.3389/fmolb.2022.971219. eCollection 2022. Front Mol Biosci. 2022. PMID: 36523654 Free PMC article.

199

Emerging Nonpharmacologic Interventions to Treat Diabetic Peripheral Neuropathy.

Enders J, Elliott D, Wright DE. Enders J, et al. Antioxid Redox Signal. 2023 May;38(13-15):989-1000. doi: 10.1089/ars.2022.0158. Epub 2023 Feb 7. Antioxid Redox Signal. 2023. PMID: 36503268 Free PMC article. Review.

200

Human FSH Glycoform α-Subunit Asparagine⁵² Glycans: Major Glycan Structural Consistency, Minor Glycan Variation in Abundance.

Butnev VY, May JV, Brown AR, Sharma T, Butnev VY, White WK, Harvey DJ, Bousfield GR. Butnev VY, et al. Front Endocrinol (Lausanne). 2022 Oct 18;13:767661. doi: 10.3389/fendo.2022.767661. eCollection 2022. Front Endocrinol (Lausanne). 2022. PMID: 36329887 Free PMC article.

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