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Spatial Clustering of Recently Activated Cytotoxic Lymphocytes Improves Association with Overall Survival in Women with High-Grade Serous Ovarian Cancer.
Soupir AC, Townsend MK, Hathaway CA, Nguyen J, Moran Segura C, Saeed-Vafa D, Ospina OE, Peres LC, Conejo-Garcia JR, Terry KL, Tworoger SS, Fridley BL. Soupir AC, et al. Cancer Epidemiol Biomarkers Prev. 2026 Apr 14;35(6):OF1-OF10. doi: 10.1158/1055-9965.EPI-25-1867. Online ahead of print. Cancer Epidemiol Biomarkers Prev. 2026. PMID: 41979596 Free PMC article.
FastPCA: An R package for fast singular value decomposition.
Ward KR, Hayes M, Peres LC, Fridley BL, Eschrich S, Soupir AC. Ward KR, et al. J Open Source Softw. 2026;11(119):9706. doi: 10.21105/joss.09706. Epub 2026 Mar 7. J Open Source Softw. 2026. PMID: 41937916 Free PMC article. No abstract available.
scSpatialSIM: a simulator of spatial single-cell molecular data.
Soupir AC, Wrobel J, Creed JH, Ospina OE, Wilson CM, Manley BJ, Peres LC, Fridley BL. Soupir AC, et al. SoftwareX. 2025 Sep;31:102223. doi: 10.1016/j.softx.2025.102223. Epub 2025 Jun 6. SoftwareX. 2025. PMID: 41908069 Free PMC article.
Homologous recombination deficiency in ovarian high-grade serous carcinoma by self-reported race.
Lawson-Michod KA, Johnson CE, Barnard ME, Davidson N, Collin LJ, Nix DA, Huff C, Berchuck A, Salas LA, Greene C, Marks JR, Peres LC, Doherty JA, Schildkraut JM. Lawson-Michod KA, et al. medRxiv [Preprint]. 2025 Jan 28:2025.01.21.25320918. doi: 10.1101/2025.01.21.25320918. medRxiv. 2025. Update in: Cancer Epidemiol Biomarkers Prev. 2025 Nov 3;34(11):2007-2014. doi: 10.1158/1055-9965.EPI-25-0762. PMID: 39974072 Free PMC article. Updated. Preprint.
WITHDRAWN: Impact of spatial clustering of cytotoxic and tumor infiltrating lymphocytes on overall survival in women with high grade serous ovarian cancer.
Soupir AC, Townsend MK, Hathaway CA, Nguyen J, Moran Segura C, Saeed-Vafa D, Ospina OE, Peres LC, Conejo-Garcia JR, Terry KL, Tworoger SS, Fridley BL. Soupir AC, et al. medRxiv [Preprint]. 2024 Feb 28:2024.01.16.24301371. doi: 10.1101/2024.01.16.24301371. medRxiv. 2024. PMID: 38293174 Free PMC article. Preprint.