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2018 1
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Page 1
Accurate somatic small variant discovery for multiple sequencing technologies with DeepSomatic.
Park J, Cook DE, Chang PC, Kolesnikov A, Brambrink L, Mier JC, Gardner J, McNulty B, Sacco S, Keskus AG, Bryant A, Ahmad T, Shetty J, Zhao Y, Tran B, Narzisi G, Helland A, Yoo B, Pushel I, Lansdon LA, Bi C, Walter A, Gibson M, Pastinen T, Reiman R, Mankame S, Ranallo-Benavidez TR, Brown C, Robine N, Barthel FP, Farooqi MS, Miga KH, Carroll A, Kolmogorov M, Paten B, Shafin K. Park J, et al. Nat Biotechnol. 2025 Oct 16. doi: 10.1038/s41587-025-02839-x. Online ahead of print. Nat Biotechnol. 2025. PMID: 41102444
Development and extensive sequencing of a broadly-consented Genome in a Bottle matched tumor-normal pair.
McDaniel JH, Patel V, Olson ND, He HJ, He Z, Cole KD, Gooden AA, Schmitt A, Sikkink K, Sedlazeck FJ, Doddapaneni H, Jhangiani SN, Muzny DM, Gingras MC, Mehta H, Behera S, Paulin LF, Hastie AR, Yu HC, Weigman V, Rojas A, Kennedy K, Remington J, Salas-González I, Sudkamp M, Wiseman K, Lajoie BR, Levy S, Jain M, Akeson S, Narzisi G, Steinsnyder Z, Reeves C, Shelton J, Kingan SB, Lambert C, Baybayan P, Wenger AM, McLaughlin IJ, Adamson A, Kingsley C, Wescott M, Kim Y, Paten B, Park J, Violich I, Miga KH, Gardner J, McNulty B, Rosen GL, McCoy R, Brundu F, Sayyari E, Scheffler K, Truong S, Catreux S, Hannah LC, Lipson D, Benjamin H, Iremadze N, Soifer I, Krieger G, Eacker S, Wood M, Cross E, Husar G, Gross S, Vernich M, Kolmogorov M, Ahmad T, Keskus AG, Bryant A, Thibaud-Nissen F, Trow J, Proszynski J, Hirschberg JW, Ryon K, Mason CE, Bhakta MS, Sanborn JZ, Munding EM, Wagner J, Xiao C, Liss AS, Zook JM. McDaniel JH, et al. Sci Data. 2025 Jul 16;12(1):1195. doi: 10.1038/s41597-025-05438-2. Sci Data. 2025. PMID: 40670386 Free PMC article.
Severus detects somatic structural variation and complex rearrangements in cancer genomes using long-read sequencing.
Keskus AG, Bryant A, Ahmad T, Yoo B, Aganezov S, Goretsky A, Donmez A, Lansdon LA, Rodriguez I, Park J, Liu Y, Cui X, Gardner J, McNulty B, Sacco S, Shetty J, Zhao Y, Tran B, Narzisi G, Helland A, Cook DE, Chang PC, Kolesnikov A, Carroll A, Molloy EK, Bi C, Walter A, Gibson M, Pushel I, Guest E, Pastinen T, Shafin K, Miga KH, Malikic S, Day CP, Robine N, Sahinalp C, Dean M, Farooqi MS, Paten B, Kolmogorov M. Keskus AG, et al. Nat Biotechnol. 2026 Feb;44(2):247-257. doi: 10.1038/s41587-025-02618-8. Epub 2025 Apr 4. Nat Biotechnol. 2026. PMID: 40185952 Free PMC article.
Medicaid Expansion, Uninsurance Rates, and Catastrophic Costs at the Time of Emergency Gynecologic Surgery.
Carrillo-Kappus K, Albright B, Unnithan S, Erkanli A, Moss H. Carrillo-Kappus K, et al. Obstet Gynecol. 2025 Apr 1;145(4):377-385. doi: 10.1097/AOG.0000000000005852. Epub 2025 Feb 27. Obstet Gynecol. 2025. PMID: 40014860 Free PMC article.
METHODS: We conducted a retrospective cohort analysis using 2012-2018 State Inpatient Data and State Ambulatory Surgery and Services Databases in four states: Kentucky and Maryland (expansion) and Florida and North Carolina (nonexpansion). ...
METHODS: We conducted a retrospective cohort analysis using 2012-2018 State Inpatient Data and State Ambulatory Surgery and Services …
Revisiting Linear Enamel Hypoplasia in Cayo Santiago Rhesus Macaques (Macaca mulatta): How a Stress Marker Relates to Environment and Maternal Lineage in a Rare Rhesus Colony With Known Life History.
Guatelli-Steinberg D, Watson J, Samuel L, Showalter E, Lerner F, Dixon E, Kensler TB, Francis G, Maldonado E, Kohn LAP, Zhao MQ, Wang Q. Guatelli-Steinberg D, et al. Am J Primatol. 2025 Feb;87(2):e23692. doi: 10.1002/ajp.23692. Epub 2024 Nov 7. Am J Primatol. 2025. PMID: 39508394 Free PMC article.
Artificial intelligence as a prediction tool for orthognathic surgery assessment.
de Oliveira PHJ, Li T, Li H, Gonçalves JR, Santos-Pinto A, Gandini Junior LG, Cevidanes LS, Toyama C, Feltrin GP, Campanha AA, de Oliveira Junior MA, Bianchi J. de Oliveira PHJ, et al. Orthod Craniofac Res. 2024 Oct;27(5):785-794. doi: 10.1111/ocr.12805. Epub 2024 May 7. Orthod Craniofac Res. 2024. PMID: 38715428 Free PMC article.
Erythrocytic vacuoles that accumulate a fluorescent dye predict spleen size and function in sickle cell disease.
Sissoko A, Fricot-Monsinjon A, Roussel C, Manceau S, Dumas L, Capito C, Allali S, Yekkache N, Dussiot M, Nguyen Y, Lefort Des Ylouses A, Aussilhou B, Tichit M, Hardy D, Maître B, Eckly A, De Montalembert M, Cavazzana M, Joseph L, Buffet P. Sissoko A, et al. Am J Hematol. 2022 Nov;97(11):E385-E388. doi: 10.1002/ajh.26690. Epub 2022 Sep 3. Am J Hematol. 2022. PMID: 36056794 Free PMC article.
The novel capsazepine analog, CIDD-99, significantly inhibits oral squamous cell carcinoma in vivo through a TRPV1-independent induction of ER stress, mitochondrial dysfunction, and apoptosis.
De La Chapa JJ, Singha PK, Self KK, Sallaway ML, McHardy SF, Hart MJ, McGuff HS, Valdez MC, Ruiz F 2nd, Polusani SR, Gonzales CB. De La Chapa JJ, et al. J Oral Pathol Med. 2019 May;48(5):389-399. doi: 10.1111/jop.12843. Epub 2019 Apr 4. J Oral Pathol Med. 2019. PMID: 30825343 Free PMC article.
Temporal trends in the epidemiology of cervical cancer in South Africa (1994-2012).
Olorunfemi G, Ndlovu N, Masukume G, Chikandiwa A, Pisa PT, Singh E. Olorunfemi G, et al. Int J Cancer. 2018 Nov 1;143(9):2238-2249. doi: 10.1002/ijc.31610. Epub 2018 Aug 7. Int J Cancer. 2018. PMID: 29786136 Free PMC article.
Cervical cancer (CC) is the leading cause of cancer death among female South Africans (SA). Improved access to reproductive health services following multi-ethnic democracy in 1994, HIV epidemic, and the initiation of CC population-based screening in early 2000s hav …
Cervical cancer (CC) is the leading cause of cancer death among female South Africans (SA). Improved access to reproductive health …