Aparicio-Puerta E - Search Results

1

IsoSeek for unbiased and UMI-informed sequencing of miRNAs from low input samples at single-nucleotide resolution.

van Eijndhoven MAJ, Scheepbouwer C, Aparicio-Puerta E, Hackenberg M, Pegtel DM. van Eijndhoven MAJ, et al. Among authors: aparicio puerta e. STAR Protoc. 2023 Dec 15;4(4):102645. doi: 10.1016/j.xpro.2023.102645. Epub 2023 Oct 19. STAR Protoc. 2023. PMID: 37858475 Free PMC article.

2

Extracellular vesicle miRNA predict FDG-PET status in patients with classical Hodgkin Lymphoma.

Drees EEE, Roemer MGM, Groenewegen NJ, Perez-Boza J, van Eijndhoven MAJ, Prins LI, Verkuijlen SAWM, Tran XM, Driessen J, Zwezerijnen GJC, Stathi P, Mol K, Karregat JJJP, Kalantidou A, Vallés-Martí A, Molenaar TJ, Aparicio-Puerta E, van Dijk E, Ylstra B, Groothuis-Oudshoorn CGM, Hackenberg M, de Jong D, Zijlstra JM, Pegtel DM. Drees EEE, et al. J Extracell Vesicles. 2021 Jul;10(9):e12121. doi: 10.1002/jev2.12121. Epub 2021 Jul 15. J Extracell Vesicles. 2021. PMID: 34295456 Free PMC article.

3

ALL-tRNAseq enables robust tRNA profiling in tissue samples.

Scheepbouwer C, Aparicio-Puerta E, Gomez-Martin C, Verschueren H, van Eijndhoven M, Wedekind LE, Giannoukakos S, Hijmering N, Gasparotto L, van der Galien HT, van Rijn RS, Aronica E, Kibbelaar R, Heine VM, Wesseling P, Noske DP, Vandertop WP, de Jong D, Pegtel DM, Hackenberg M, Wurdinger T, Gerber A, Koppers-Lalic D. Scheepbouwer C, et al. Genes Dev. 2023 Mar 1;37(5-6):243-257. doi: 10.1101/gad.350233.122. Epub 2023 Feb 21. Genes Dev. 2023. PMID: 36810209 Free PMC article.

4

Reassessment of miRNA variant (isomiRs) composition by small RNA sequencing.

Gómez-Martín C, Aparicio-Puerta E, van Eijndhoven MAJ, Medina JM, Hackenberg M, Pegtel DM. Gómez-Martín C, et al. Among authors: aparicio puerta e. Cell Rep Methods. 2023 May 16;3(5):100480. doi: 10.1016/j.crmeth.2023.100480. eCollection 2023 May 22. Cell Rep Methods. 2023. PMID: 37323569 Free PMC article.

5

sRNAbench and sRNAtoolbox 2022 update: accurate miRNA and sncRNA profiling for model and non-model organisms.

Aparicio-Puerta E, Gómez-Martín C, Giannoukakos S, Medina JM, Scheepbouwer C, García-Moreno A, Carmona-Saez P, Fromm B, Pegtel M, Keller A, Marchal JA, Hackenberg M. Aparicio-Puerta E, et al. Nucleic Acids Res. 2022 Jul 5;50(W1):W710-W717. doi: 10.1093/nar/gkac363. Nucleic Acids Res. 2022. PMID: 35556129 Free PMC article.

6

sRNAtoolbox: Dockerized Analysis of Small RNA Sequencing Data in Model and Non-model Species.

Gómez-Martín C, Aparicio-Puerta E, Hackenberg M. Gómez-Martín C, et al. Methods Mol Biol. 2023;2630:179-213. doi: 10.1007/978-1-0716-2982-6_13. Methods Mol Biol. 2023. PMID: 36689184

7

Comprehensive, integrative genomic analysis of microRNA expression profiles in different tissues of two wheat cultivars with different traits.

Gómez-Martín C, Zhou H, Medina JM, Aparicio-Puerta E, Hackenberg M, Shi B. Gómez-Martín C, et al. Funct Integr Genomics. 2022 Dec 23;23(1):15. doi: 10.1007/s10142-022-00920-1. Funct Integr Genomics. 2022. PMID: 36562829

8

Genome-Wide Analysis of microRNA Expression Profile in Roots and Leaves of Three Wheat Cultivars under Water and Drought Conditions.

Gómez-Martín C, Zhou H, Medina JM, Aparicio-Puerta E, Shi B, Hackenberg M. Gómez-Martín C, et al. Biomolecules. 2023 Feb 26;13(3):440. doi: 10.3390/biom13030440. Biomolecules. 2023. PMID: 36979375 Free PMC article.

9

liqDB: a small-RNAseq knowledge discovery database for liquid biopsy studies.

Aparicio-Puerta E, Jáspez D, Lebrón R, Koppers-Lalic D, Marchal JA, Hackenberg M. Aparicio-Puerta E, et al. Nucleic Acids Res. 2019 Jan 8;47(D1):D113-D120. doi: 10.1093/nar/gky981. Nucleic Acids Res. 2019. PMID: 30357370 Free PMC article.

10

sRNAbench and sRNAtoolbox 2019: intuitive fast small RNA profiling and differential expression.

Aparicio-Puerta E, Lebrón R, Rueda A, Gómez-Martín C, Giannoukakos S, Jaspez D, Medina JM, Zubkovic A, Jurak I, Fromm B, Marchal JA, Oliver J, Hackenberg M. Aparicio-Puerta E, et al. Nucleic Acids Res. 2019 Jul 2;47(W1):W530-W535. doi: 10.1093/nar/gkz415. Nucleic Acids Res. 2019. PMID: 31114926 Free PMC article.

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