Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation

Search Page

Filters

My Custom Filters

Edit custom filters

Publication date

Text availability

Article attribute

Article type

Additional filters

Article Language

Species

Sex

Age

Other

Search Results

54 results

Filters applied: . Clear all
Results are displayed in a computed author sort order. The Publication Date timeline is not available.
Page 1
What is the current bottleneck in mapping molecular interaction networks?
Skinnider MA, Luck K, Mukhtar MS, Garrido-Rodriguez M, Saez-Rodriguez J, van Leeuwen J, Beltrao P, Carvunis AR, Taipale M, Emili A, Bulyk ML, Krogan NJ. Skinnider MA, et al. Among authors: carvunis ar. Cell Syst. 2025 May 21;16(5):101295. doi: 10.1016/j.cels.2025.101295. Cell Syst. 2025. PMID: 40403700 No abstract available.
Author Correction: Community benchmarking and evaluation of human unannotated microprotein detection by mass spectrometry based proteomics.
Wacholder A, Deutsch EW, Kok LW, van Dinter JT, Lee J, Wright JC, Leblanc S, Jayatissa AH, Jiang K, Arefiev I, Cao K, Bourassa F, Trifiro FA, Bassani-Sternberg M, Baranov PV, Bogaert A, Chothani S, Fierro-Monti I, Fijalkowska D, Gevaert K, Hubner N, Mudge JM, Ruiz-Orera J, Schulz J, Vizcaíno JA, Prensner JR, Brunet MA, Martinez TF, Slavoff SA, Roucou X, Choudhary JS, van Heesch S, Moritz RL, Carvunis AR. Wacholder A, et al. Among authors: carvunis ar. Nat Commun. 2026 Jun 2;17(1):4882. doi: 10.1038/s41467-026-73431-3. Nat Commun. 2026. PMID: 42230598 Free PMC article. No abstract available.
Expanding the human proteome with microproteins and peptideins.
Deutsch EW, Kok LW, Mudge JM, Valls CF, Jungreis I, Ruiz-Orera J, Sun Z, Kusebauch U, Fierro-Monti I, Abelin JG, Alba MM, Aspden JL, Bandyopadhyay S, Banerjee K, Baranov PV, Bazzini AA, Bourassa F, Bruford EA, Calviello L, Carr SA, Carvunis AR, Chothani S, Clauwaert J, Dean K, Faridi P, Frankish A, Goodale A, Green T, Hubner N, Ingolia NT, Kellis M, Magrane M, Martin MJ, Martinez TF, Menschaert G, Ohler U, Orchard S, Potter A, Rackham OJL, Rees MG, Root DE, Roth JA, Roucou X, Sialana FJ, Slavoff SA, Świrski MI, Tierney JAS, Trifiro FA, Valen E, Vasylieva V, Wacholder A, Wang S, Wang L, Weissman JS, Wu W, Xie Z, Choudhary JS, Bassani-Sternberg M, Vizcaíno JA, Ternette N, Brunet MA, Moritz RL, Prensner JR, van Heesch S. Deutsch EW, et al. Among authors: carvunis ar. Nature. 2026 May 6. doi: 10.1038/s41586-026-10459-x. Online ahead of print. Nature. 2026. PMID: 42092140 Free article.
An expanded reference catalog of translated open reading frames for biomedical research.
Chothani S, Ruiz-Orera J, Tierney JAS, Swirski MI, Tjeldnes H, Kok LW, Clauwaert J, Deutsch EW, Alba MM, Aspden JL, Baranov PV, Bazzini AA, Bruford EA, Brunet MA, Cardon T, Carvunis AR, Casola C, Choudhary JS, Dean K, Faridi P, Fierro-Monti I, Fournier I, Frankish A, Gerstein M, Hubner N, Jiang Y, Kellis M, Martinez TF, Menschaert G, Ni P, Orchard S, Roucou X, Rozowsky J, Salzet M, Siragusa M, Slavoff S, Ternette N, Vizcaino JA, Wacholder A, Wu W, Xie Z, Yang YT, Moritz RL, Valen E, Mudge J, van Heesch S, Prensner JR, Rackham OJL. Chothani S, et al. Among authors: carvunis ar. Nucleic Acids Res. 2026 Mar 19;54(6):gkag234. doi: 10.1093/nar/gkag234. Nucleic Acids Res. 2026. PMID: 41873765 Free PMC article.
Community benchmarking and evaluation of human unannotated microprotein detection by mass spectrometry based proteomics.
Wacholder A, Deutsch EW, Kok LW, van Dinter JT, Lee J, Wright JC, Leblanc S, Jayatissa AH, Jiang K, Arefiev I, Cao K, Bourassa F, Trifiro FA, Bassani-Sternberg M, Baranov PV, Bogaert A, Chothani S, Fierro-Monti I, Fijalkowska D, Gevaert K, Hubner N, Mudge JM, Ruiz-Orera J, Schulz J, Vizcaíno JA, Prensner JR, Brunet MA, Martinez TF, Slavoff SA, Roucou X, Choudhary JS, van Heesch S, Moritz RL, Carvunis AR. Wacholder A, et al. Among authors: carvunis ar. Nat Commun. 2026 Jan 21;17(1):1241. doi: 10.1038/s41467-025-68002-x. Nat Commun. 2026. PMID: 41559053 Free PMC article.
Translon: a single term for translated regions.
Świrski MI, Tierney JAS, Albà MM, Andreev DE, Aspden JL, Atkins JF, Bassani-Sternberg M, Berry MJ, Biffo S, Boris-Lawrie K, Borodovsky M, Brierley I, Brook M, Brunet MA, Bujnicki JM, Caliskan N, Calviello L, Carvunis AR, Cate JHD, Cenik C, Chang KY, Chen Y, Chothani S, Choudhary JS, Clark PL, Clauwaert J, Cooley L, Dassi E, Dean K, Diaz JJ, Dieterich C, Dikstein R, Dinman JD, Dmitriev SE, Dontsova OA, Dunham CM, Eswarappa SM, Farabaugh PJ, Faridi P, Fierro-Monti I, Firth AE, Gatfield D, Gebauer F, Gelfand MS, Gray NK, Green R, Hill CH, Hou YM, Hübner N, Ignatova Z, Ivanov P, Iwasaki S, Johnson R, Jomaa A, Jovanovic M, Jungreis I, Kellis M, Kieft JS, Kochetov AV, Koonin EV, Korostelev AA, Kufel J, Kulakovskiy IV, Kurian L, Lafontaine DLJ, Larsson O, Loughran G, Lukeš J, Mariotti M, Martens-Uzunova ES, Martinez TF, Matsumoto A, McManus J, Medenbach J, Melnikov SV, Menschaert G, Merchante C, Mikl M, Miller WA, Mühlemann O, Namy O, Nedialkova DD, Nosek J, Orchard S, Ozretić P, Pertea M, Pervouchine DD, Romão L, Ron D, Roucou X, Rubtsova MP, Ruiz-Orera J, Saghatelian A, Salzberg SL, Seale LA, Seoighe C, Sergiev PV, Shah P, Shirokikh N, Slavoff SA, Sonenberg N, Stasevich TJ, Szcz… See abstract for full author list ➔ Świrski MI, et al. Among authors: carvunis ar. Nat Methods. 2025 Oct;22(10):2002-2006. doi: 10.1038/s41592-025-02810-3. Nat Methods. 2025. PMID: 40890551 Free article. No abstract available.
An expanded reference catalog of translated open reading frames for biomedical research.
Chothani S, Ruiz-Orera J, Tierney JAS, Clauwaert J, Deutsch EW, Alba MM, Aspden JL, Baranov PV, Bazzini AA, Bruford EA, Brunet MA, Cardon T, Carvunis AR, Casola C, Choudhary JS, Dean K, Faridi P, Fierro-Monti I, Fournier I, Frankish A, Gerstein M, Hubner N, Jiang Y, Kellis M, Kok LW, Martinez TF, Menschaert G, Ni P, Orchard S, Roucou X, Rozowsky J, Salzet M, Siragusa M, Slavoff S, Swirski MI, Valen E, Vizcaino JA, Wacholder A, Wu W, Xie Z, Yang YT, Moritz RL, Mudge J, van Heesch S, Prensner JR, Rackham OJ. Chothani S, et al. Among authors: carvunis ar. bioRxiv [Preprint]. 2025 Jul 7:2025.07.03.662928. doi: 10.1101/2025.07.03.662928. bioRxiv. 2025. Update in: Nucleic Acids Res. 2026 Mar 19;54(6):gkag234. doi: 10.1093/nar/gkag234. PMID: 40672165 Free PMC article. Updated. Preprint.
Detection of human unannotated microproteins by mass spectrometry-based proteomics: a community assessment.
Wacholder A, Deutsch EW, Kok LW, van Dinter JT, Lee J, Wright JC, Leblanc S, Jayatissa AH, Jiang K, Arefiev I, Cao K, Bourassa F, Trifiro FA, Bassani-Sternberg M, Baranov PV, Bogaert A, Chothani S, Fierro-Monti I, Fijalkowska D, Gevaert K, Hubner N, Mudge JM, Ruiz-Orera J, Schulz J, Vizcaíno JA, Prensner JR, Brunet MA, Martinez TF, Slavoff SA, Roucou X, Choudhary JS, van Heesch S, Moritz RL, Carvunis AR. Wacholder A, et al. Among authors: carvunis ar. bioRxiv [Preprint]. 2025 Jul 27:2025.02.19.639069. doi: 10.1101/2025.02.19.639069. bioRxiv. 2025. Update in: Nat Commun. 2026 Jan 21;17(1):1241. doi: 10.1038/s41467-025-68002-x. PMID: 40027765 Free PMC article. Updated. Preprint.
54 results